Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0438 ATGATGTATTTCTCGCATGTTAGGAAGGTCGCTCCGCTGTGTTCCTCCCTCCTATCTCTTGTGGAAGCAGATCGCGGCTCAATGGTTTACGTCAAGGCTCAGAAATCAAGGGCCTACTTCAAGAGGTATCAAGTTAAGTTCAAGAGAAGAAGAGAGGGTAAAACTGACTACCGAGCTAGGATTCGGTTGATTAACCAGGATAAGAACAAGTATAACACCCCAAAGTACCGCTTTGTGGTTCGATTTACAAACAAGGATATCATTGCCCAGATCACATCTGCTAGCATTGCTGGTGATATTGTCCTTGCTGCAGCTTATGCACGTGAGCTGCCACGCTATGGTCTGGAAGTAGGTCTCACCAACTATGCTGCAGCTTATTGCACTGGACTGCTTTTGGCCCGCCGAGTCCTCAAGATGCTTGAATTGGAGGAGGAGTATGAGGGCAATGTTGAGGCAACTGGGGAGGACTATTCAGTTGAACCTGCTGAAACTAGGAGGCCCTTCCGTGCTCTCCTTGATGTTGGTCTTATAAGGACCACCACTGGCAATCGGGTATTCGGTGCCCTTAAGGGAGCACTGGATGGGGGTCTGGATATTCCTCACAGTGATAAAAGGTTTGCTGGTTTCAACAAGGACAAGAAGGAGCTTGATGCTGATGTTCACCGTAGATATATCTTTGGTGGCCATGTTGCTGCCTATATGAAGACTTTGATGGAAGATGAACCCGAGAAATACCAGTCGCATTTTAGTGAATATCTCAAGCGAGGATTGGAGCCAGATGGTCTTGAGGAGATGTACAAGAAGGTCCATGCTGCCATTCGTGCAGATCCAACAGTGAAGAAATCAGAGAAGGAACAACCTAAGGAACACAAGAGGTTCAACTTGAAGAAGCTGACATATGAAGAGAGGAAGGCTAAGTTGGTTGCACGGTTGCAGGCTCTCAACTCAGCTGCTGGTGGTGGAGATGATGATGATGAGGATGACGACGAGTGA 993 0.4743 MMYFSHVRKVAPLCSSLLSLVEADRGSMVYVKAQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQITSASIAGDIVLAAAYARELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLELEEEYEGNVEATGEDYSVEPAETRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFNKDKKELDADVHRRYIFGGHVAAYMKTLMEDEPEKYQSHFSEYLKRGLEPDGLEEMYKKVHAAIRADPTVKKSEKEQPKEHKRFNLKKLTYEERKAKLVARLQALNSAAGGGDDDDEDDDE 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0438 330 Hamap 50S ribosomal protein L18 [rplR]. 41 273 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele41g0438 330 Pfam Ribosomal L18 C-terminal region 262 315 IPR025607 -
Lele41g0438 330 FunFam 60S ribosomal protein L5 28 318 - -
Lele41g0438 330 PRINTS Ribosomal protein L5 signature 191 210 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele41g0438 330 PRINTS Ribosomal protein L5 signature 171 190 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele41g0438 330 PRINTS Ribosomal protein L5 signature 111 131 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele41g0438 330 PRINTS Ribosomal protein L5 signature 233 253 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele41g0438 330 PRINTS Ribosomal protein L5 signature 47 66 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele41g0438 330 PRINTS Ribosomal protein L5 signature 70 89 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele41g0438 330 MobiDBLite consensus disorder prediction 277 296 - -
Lele41g0438 330 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 41 202 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele41g0438 330 CDD Ribosomal_L18_L5e 68 197 - -
Lele41g0438 330 Gene3D - 28 318 - -
Lele41g0438 330 PANTHER RIBOSOMAL PROTEIN L5-RELATED 28 317 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lele41g0438 330 SUPERFAMILY Translational machinery components 38 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0438 Lele-ChrLele41 3900247 3905775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0438 28 319 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 80.822 0.0 499