Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0385 ATGGCCTTTCGCCTATACCCATATGACATAACGACAATCACCGAGCTGCTGTTCAGGCAGAAAATTGTGAAGAAGCGTGTCAAAAAGTTCAAGAGGCCCCAGAGTGACAGGAAAATTTCTGTGAAGGTATGTGTTTTCACATCAGTTCCTTACAAGAAGACCCGTCACTATCTCCCTAATGGATTCAAGAAATTTGTTGTTCACAATGTGAATGAGCTGGAACTCTTGATGATGCACAACAGGACTTACTGTGCTGAGATAGCGCACAATGTATCAACCCGGAAGCGAAAGGAGATCGTCGAGCGGGCAGCGCAGTTGGATGTTGTTGTTACCAACGGAACAGCCAGGTTGCGTAGCCAAGAGGACGAGTGA 372 0.4651 MAFRLYPYDITTITELLFRQKIVKKRVKKFKRPQSDRKISVKVCVFTSVPYKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVVTNGTARLRSQEDE 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0385 123 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 16 42 IPR001515 GO:0003735|GO:0005840|GO:0006412
Lele41g0385 123 Pfam Ribosomal protein L32 52 112 IPR001515 GO:0003735|GO:0005840|GO:0006412
Lele41g0385 123 SUPERFAMILY Ribosomal protein L32e 13 121 IPR036351 -
Lele41g0385 123 SMART Ribosomal_L32e_2 27 112 IPR001515 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0385 Lele-ChrLele41 3133047 3137882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0385 17 123 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 65.891 1.14e-51 158
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0385 41 3133047 3137882 Lele43g0990 43 18452069 18454125 hybridization
Lele41g0385 41 3133047 3137882 Lele44g0976 44 18510486 18512690 hybridization