Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0379 ATGGCAAAGTCTGGCGTGGCGGCGGCGGACTCTGATCCGACGGCGGCGGCGGCGGCAACGAATGTGTTGGAGTTGAAGAAGGAGTTGAACAGATTGGTGAAGTCCATCGTCGACGATGATGATTGCCGCATCCAAACCATTGATCAAGCTAAGGAAGCTCTTTCCGCTCTTAAGGACCTCAAGCTTCGAAAGAGATCATCGTCATCCCCATCTTCACAACAATCTTCGTCTTTCAAGCTAAACAGAAATTCCGCTTTTCCTGAAGAATTTAAGTGCCCTCTTTCTAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGGAAGACATATGATAGGCCCTTTATTCAAAAATGGCTGAAAGCTGGGAACAGAACTTGTCCTCAAACACAACAAGTCCTCTCACACACTCTCCTCATTCCAAATCATCTCATAAGGGAGATGATAGAACAGTGGTGTAAGAACCATGGAGTGGAATTATCCAACCAAATTCACTATATTTACAATGAGGAAGACATAATAACAAAAGGGGATCGCCATCAGTTTCATTCTCTTCTCGAGAAGATGTCCTCTTCAGCGCGTTCTGAGCAGAAAGCAGCCGCGAAGCAGCTTCGGTTGTTGACGAAGAAGATGCCTTTGTATAGAACACTCTTTGGTGAGACTCCACAAGCCATTTCTGATATTCTCAAACCGATCTCTGCGAGCGACTCTTTCAACAACACTCATCCTGATCTCCAAGAAGACGTGATCACAACACTTTTGAACATCTCAATCCATGACAACAACAAGAAGCTTGTCGCACAAACTCCCTCGGTGATTCCAATCCTTGTGAAAGCCTTAAAATCAGGAACTATAGAAACTAGAAGCAATTCTGCAGCTACCCTTTTCACTTTATCTGCTCTAGACTCGAACAAGGAGCTTATCGGTAAATCTGGTGCCTTGAAGCCATTAATTGACCTCTTAGAAGAAGGCCATCCTTTAGCGATGAAAGATGTTGCTTCAGCAATTTTCACGTTGTGTGTGGTTCATGAGAACAAGGCAAGAGCGGTGAAGGAAGGGGCGGTAAGTGTTATATTGAGGAAGATCTCAAGCCGGGTTTACGTCGATGAATTGCTCACGATCCTCGCCCTGCTCTCGAGTCATCAAAAGGCTGTTCAGGACATGGTAGATGTTGGAGCTGTTCCTAACTTGCTGAGCATCATGAGGGAGACGAATTGCGAACAAAACAAAGAGAACTGCATCGCGATTCTTCAGACTATATGTCAGTATGACAGAGGAAAGTTGAAGGAGATGAAAGAAGAGGAGATTACATTTAGAACTATCACTGATCTTGCATTGAATGGAACTTCAAGGGCTAAGAGAAAAGCTAGTGGAATTCTTGAGAGACTTAATAGGGTTGTTAATATTACACACACTGCATAA 1422 0.4416 MAKSGVAAADSDPTAAAAATNVLELKKELNRLVKSIVDDDDCRIQTIDQAKEALSALKDLKLRKRSSSSPSSQQSSSFKLNRNSAFPEEFKCPLSKELMRDPVIVASGKTYDRPFIQKWLKAGNRTCPQTQQVLSHTLLIPNHLIREMIEQWCKNHGVELSNQIHYIYNEEDIITKGDRHQFHSLLEKMSSSARSEQKAAAKQLRLLTKKMPLYRTLFGETPQAISDILKPISASDSFNNTHPDLQEDVITTLLNISIHDNNKKLVAQTPSVIPILVKALKSGTIETRSNSAATLFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVASAIFTLCVVHENKARAVKEGAVSVILRKISSRVYVDELLTILALLSSHQKAVQDMVDVGAVPNLLSIMRETNCEQNKENCIAILQTICQYDRGKLKEMKEEEITFRTITDLALNGTSRAKRKASGILERLNRVVNITHTA 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0379 473 SUPERFAMILY RING/U-box 85 160 - -
Lele41g0379 473 SMART Ubox_2 89 152 IPR003613 GO:0004842|GO:0016567
Lele41g0379 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 159 IPR013083 -
Lele41g0379 473 ProSiteProfiles U-box domain profile. 85 159 IPR003613 GO:0004842|GO:0016567
Lele41g0379 473 FunFam RING-type E3 ubiquitin transferase 85 159 - -
Lele41g0379 473 FunFam RING-type E3 ubiquitin transferase 172 469 - -
Lele41g0379 473 Pfam U-box domain 87 156 IPR003613 GO:0004842|GO:0016567
Lele41g0379 473 CDD RING-Ubox_PUB 90 132 IPR045210 -
Lele41g0379 473 Gene3D - 162 467 IPR011989 -
Lele41g0379 473 SUPERFAMILY ARM repeat 181 463 IPR016024 -
Lele41g0379 473 PANTHER U BOX DOMAIN-CONTAINING 40 463 - -
Lele41g0379 473 SMART arm_5 301 341 IPR000225 GO:0005515
Lele41g0379 473 SMART arm_5 381 422 IPR000225 GO:0005515
Lele41g0379 473 SMART arm_5 259 300 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0379 Lele-ChrLele41 3095443 3098027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0379 148 473 U-box Gene Family AT3G07360 58.788 2.61e-132 384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0379 41 3095443 3098027 Lele43g0995 43 18495234 18497808 hybridization
Lele41g0379 41 3095443 3098027 Lele44g0983 44 18580262 18582884 hybridization