LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele41g0308	ATGAACAATGTTCATGGGTATAATCATTCAAAAAACACTGATACAATTTTTCCTTTGACTCAGACTTGTCTTGTTGTTGGGTTATATTTGGTTCTGAGGAAGACAAGGGAAAAAGCAACTGGCTACATAGCAGGAATCTTTGAGTTCATGGAGTTTTGGGATTCATGGGTTGTCTTCTTTCTGGTTTTTAGCTTCTTGGTTGGCGTTTTCTGTGATCAAGATGGTTTCTTAAGTATGTCTTGTGGTGGAAGAACAAGTTTCAATGATTCATCAAACATCTTATGGACGCCAGACACTGCATACATAAGCACAGGCACTACAGCAATCAGTTACAATGATAATAACTCCTCATCGAATGTCTCTCTCCGGTTCTTCCCGGAGTCCCAAGGTCGAAAATGCTATAAATTACCGTTGAGCAATGCCACGAGTCTTGTTCTTGTTAGAGCCAAGTTTGTGTACAACAACTACGATGGACTTGAACGTCCTCCTACATTCTCTGTCTCTCTTGGGACAGCCATTGCTGCTACTGTAAATCTTACTATAGATGATCCATGGACTGAAGAGTTTGTATGGAAAGTCAATAAGAACACATTGCCCTTCTGTTTACTTGCTGCCTCAAATGGTGGATTCCCTGTGATTTCTTCACTCGAAATCAGGCCTCTTCCTCGAGGAGCCTACACAAATGGCATGGAAGATTTCTCAAATAAGTTACTGAGGAAGAGTTATCGAATTGATTGTGGCTCTGCTAATGAGTCTATCCGGTACCCCTTGGACCCATATGATAGAATATGGGAAGCTGATAGAAGTTTTACACCCTTTCATGTTGCAACTGGATTCAAGATACAGCTTACTTTCAATCAGTCCAGTCTGATGGAAAAACCACCGGCTGCTGTTCTTCAAACCGGGAGAGTTTTGGCACGGCGAAATCTGCTGACATATAACCTCCCTCTTCATGCTTTAGGGGACTATTATATCATTCTTTATTTTGCTGGCATACTTCCTGTTTTCCCCTCATTTGATGTGTTCATAAATGGAGATATCATAAAATCAAACTACAAAATAAATGGTTCAGAAAGCAGTGCTCTATATGTGACAAGAAAGGGAATCAGAAGCTTGAATATAACACTGAAGAGTATCAGCTTTTACCCTCAAATCAATGCATTTGAGGTATATCAAATGGTTGATATGCCATCTGAAGTTTCTTCAACCACAGTCTCAGCACTACAGGTTATTCAGCAGTCCGCTGGCTTTGATCTAGGATGGCAAGATGATCCATGCTTTCCTTCACCATGGGATCATATTGGATGTGAAGGAAGCCTTGTAACATCACTATGTTTATTCCAACTTGCGGGAGAAGAAATTGATATAAGGAACTGGGGTGCCGCAAAAGTGGTTTCATACAAAGAAATTAAAGTAGCTACTGGAAACTTTAAAGAAGTTATAGGAAGAGGCAGTTTTGGCTCAGTTTACCATGGAAGGCTTCCAGATGGTAAATCGGTCGCTGTCAAAGTTCGGCTGGACAAAACCCAACTAGGAGCTGATTCTTTCATCAATGAGGTTCATCTTTTGTCAAAAATCCGCCATCAAAACCTTGTGTCATTGGAAGGATTTTGCTATGAATCAAAGCATCAGATACTAGTGTATGAGTACTTGGATGGTGGATCACTAGCTGATCATCTCTATGGATTGGATTATTTACATAATGGAAGTGAACCGCGAATCATTCACCGCGATGTCAAGTGCAGTAATATCCTCTTAGATGAGGAGATGAATGGGAAAGTCTGTGACTTTGGCCTCTCTAAGCAAGTAACCAAGGCAGATGCAACTCATGTCACCACTGTTGTCAAGGGCACTGCTGGCTATCTAGATCCTGAGTATTATTCCACCCAACAGCTCACTGAGAAAAGTGATGTATATAGCTTTGGAGTTGTCCTATTGGAACTCATCTGTGGGAGAGAGCCATTGAATCACTCTGGATCTCCTGATTCTTTCAATTTGGTCTTATGGGCAAAGCCTTACTTGCAGGCAGGAGCATTTGAAATTGTGGATGATAGCATAAAGGGAAATTTTGATGTAGAGAGCATGAGGAAGACAGCCTACATTGCTGTGAAGTCAGTGGAAAGGGATGCATCACTGAGACCAACTGTTGCAGAAGTATTAGCAGAACTAAAGGAAGCATATGATATTCAGCTCAGATACCTTGAGTCTCTCTAA	2214	0.4115	MNNVHGYNHSKNTDTIFPLTQTCLVVGLYLVLRKTREKATGYIAGIFEFMEFWDSWVVFFLVFSFLVGVFCDQDGFLSMSCGGRTSFNDSSNILWTPDTAYISTGTTAISYNDNNSSSNVSLRFFPESQGRKCYKLPLSNATSLVLVRAKFVYNNYDGLERPPTFSVSLGTAIAATVNLTIDDPWTEEFVWKVNKNTLPFCLLAASNGGFPVISSLEIRPLPRGAYTNGMEDFSNKLLRKSYRIDCGSANESIRYPLDPYDRIWEADRSFTPFHVATGFKIQLTFNQSSLMEKPPAAVLQTGRVLARRNLLTYNLPLHALGDYYIILYFAGILPVFPSFDVFINGDIIKSNYKINGSESSALYVTRKGIRSLNITLKSISFYPQINAFEVYQMVDMPSEVSSTTVSALQVIQQSAGFDLGWQDDPCFPSPWDHIGCEGSLVTSLCLFQLAGEEIDIRNWGAAKVVSYKEIKVATGNFKEVIGRGSFGSVYHGRLPDGKSVAVKVRLDKTQLGADSFINEVHLLSKIRHQNLVSLEGFCYESKHQILVYEYLDGGSLADHLYGLDYLHNGSEPRIIHRDVKCSNILLDEEMNGKVCDFGLSKQVTKADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLNHSGSPDSFNLVLWAKPYLQAGAFEIVDDSIKGNFDVESMRKTAYIAVKSVERDASLRPTVAEVLAELKEAYDIQLRYLESL	737

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele41g0308	737	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	574	586	IPR008271	GO:0004672\|GO:0006468
	Lele41g0308	737	SMART	serkin_6	475	727	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele41g0308	737	ProSitePatterns	Protein kinases ATP-binding region signature.	481	503	IPR017441	GO:0005524
	Lele41g0308	737	PANTHER	OS07G0107800 PROTEIN-RELATED	462	727	-	-
	Lele41g0308	737	FunFam	serine/threonine-protein kinase PBS1-like	450	550	-	-
	Lele41g0308	737	Pfam	Malectin-like domain	80	393	IPR024788	-
	Lele41g0308	737	Gene3D	-	239	395	-	-
	Lele41g0308	737	Gene3D	Phosphorylase Kinase; domain 1	452	550	-	-
	Lele41g0308	737	Pfam	Protein kinase domain	478	720	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele41g0308	737	ProSiteProfiles	Protein kinase domain profile.	475	727	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele41g0308	737	Gene3D	Transferase(Phosphotransferase) domain 1	552	733	-	-
	Lele41g0308	737	SUPERFAMILY	Protein kinase-like (PK-like)	463	727	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele41g0308	Lele-ChrLele41	2507518	2518261	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele41g0308	453	736	Receptor kinase-like Gene Family	AT5G48740	73.290	3.52e-151	461

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Lele41g0308		Malectin_like	9.3e-54	CL0202