Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0287 ATGATTAGGGTTAGGGCAATCACGCGTATGGAAGCGTCACCCTACCCCGTCACTCCTCCGGTGACTTCCAGCTCCAATCGATACGGTATCCCATCGGCTTCCCATATTATTCAGGCGCCCTTGTCGTTGTTGTTGGAGCATTTAGGGATTCTTCGAAGCAGGTCTAATCAACAAGAGGCTGAGCCCTTAATCAACAATAATCGAGTATCTTCTGGGTTCCGTGATGCCCTACGGAATCGCCTTGTTGAGTCCTCCGTTATTCCTAATGATGGGGAGGTTTCAATTAGTATTATTGGGGCTGGGGAACAACGGCTTGACAGGGAAGGCGAAGTGAGGGAAGTTCTGTCCCAGAATGAAGTATCCATACCGGCGCAACCGTTGGCTGGGATGCCCTCTGTGACGCTTCCTTCGGGTAATCAGGAACGTTCGAGGACTGAGCATGTTGCAGAAGAGGGCGTTTCCCAATCTGTGAATGCAAATTCTGATGCCGAGGCTGGTGATGGAGTTGGGGCTAACGCTAGGGATTCTTCAACCCAGAGGTATGATATTCAGCAGGCTGCTCGCTGGATTGAACAGGTCCTGCCTTTTTCTTTATTGTTGCTGGTCGTCTTCGTTCGGCAGCATTTGCAAGGTTTTTTTGTTACAATTTGGGTTACCGCTGTCCTTTTCAAGACAAATGACATTTTGCGGAAGCAGACAGCTCTGAAGGGAGAGAGGAAAGTCCCCGTATTGATTGCCATTTCTATTGCATTTACATTGCACGTGGTTGGTGTATATTGGTGGTGTCAGAATAACGATATGCTATACCCATTGGCTATGCTTCCTCCCAAAGGCATACCTCCATTCTGGCATGTTATTTTCATCATCACAGTAAATGATGCTTTGGTCCGCCAAGCTGGAATGGTATTCAAGTGTATTTTGTTGATGTATTACAAGAATGGCAGAGGCCGAAATTATCGTAAGCAGGGCCAAATGCTGACTCTAGTTGAGTACCTACTCCTTCTTTACCGTGCCTTGTTGCCAACTCCAGTATGGTATCGGTTCTTCTTGAACAAAGAATATGGAAGTTTCTTTTCTTCATTGATGACAGGATTATATCTAACATTTAAGCTGACATCAGTCATCGAAAAGGTGCAATCCTTCTTTGCTTCAGTGAAGGCTTTGTCACGTAAAGAAGTGCACTATGGGGCTTATGCAACATCAGAACAGGTGAATGCCGTTGGTGATCTTTGTGCTATTTGCCAGGAAAAGATGCATACCCCTATCTTACTTTCTTGTAATCACATCTTCTGCGAAGAATGCGTATCAGAATGGTTTGAGAGGGAAAGGACGTGCCCCTTGTGCAGGGCTTTGGTGAAACCGGCTGAGCTTAAATCATTTGGGGATGGCTCTACTAGTTTGTTTTTCCAGTTATTCTAA 1419 0.4588 MIRVRAITRMEASPYPVTPPVTSSSNRYGIPSASHIIQAPLSLLLEHLGILRSRSNQQEAEPLINNNRVSSGFRDALRNRLVESSVIPNDGEVSISIIGAGEQRLDREGEVREVLSQNEVSIPAQPLAGMPSVTLPSGNQERSRTEHVAEEGVSQSVNANSDAEAGDGVGANARDSSTQRYDIQQAARWIEQVLPFSLLLLVVFVRQHLQGFFVTIWVTAVLFKTNDILRKQTALKGERKVPVLIAISIAFTLHVVGVYWWCQNNDMLYPLAMLPPKGIPPFWHVIFIITVNDALVRQAGMVFKCILLMYYKNGRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSFFSSLMTGLYLTFKLTSVIEKVQSFFASVKALSRKEVHYGAYATSEQVNAVGDLCAICQEKMHTPILLSCNHIFCEECVSEWFERERTCPLCRALVKPAELKSFGDGSTSLFFQLF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0287 472 MobiDBLite consensus disorder prediction 126 174 - -
Lele41g0287 472 ProSiteProfiles Zinc finger RING-type profile. 411 449 IPR001841 -
Lele41g0287 472 ProSitePatterns Zinc finger RING-type signature. 426 435 IPR017907 -
Lele41g0287 472 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 23 472 IPR044235 GO:0061630|GO:1904294
Lele41g0287 472 CDD RING-HC_RNFT1_like 410 449 - -
Lele41g0287 472 Pfam Zinc finger, C3HC4 type (RING finger) 409 452 - -
Lele41g0287 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 459 IPR013083 -
Lele41g0287 472 SUPERFAMILY RING/U-box 403 454 - -
Lele41g0287 472 SMART ring_2 411 448 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0287 Lele-ChrLele41 2359685 2363946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0287 24 472 C3H Transcription Factor Family AT5G01960 66.009 0.0 599