Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0271 ATGGCTTCCCTGCTTCTTCGTCCTCCTCCATATACCCTTCAACACAAGCTCATAACAACATCCTTCCCTCCGTTGAAATCCAATTCACCAAATAACGTTTCTTTTTTAACAACACACCGTTTCAAGAGTAGTAACCCCATAAAGTGTAAAGCTTTTCTCGACAACGTTCCCAACGATTTGTTCGAGAACACTATCTACCTGAATCAATTCCCTGTTCTTCGATCAGGGCTAGTCCAATTTCAGAGCTTGACTGAAGATTTATCCGATTTCCAGAAATGGGGTTTCCTTGTTTTTGCAGGACTGACGTGGATTTACTTGACTGCGAGGCCTGGTGTTCTTATTGGCGCCATTGATGCCTACCTTCTGGCTCCTCTGCAACTCGGTTTGGACAATTTAAGAGGAAGAAGGAATCTCAAGAGGACTGATTTTATGATTGGAGATAAGATTGGGGAAGGGTCATTTGGTGTTGTTTATTCTGGTGTTGTGGTTCCAAAGAATGGTGGTTACGTTGAAGAGAATGTGCAGAAGAGGGGAAGAGGCAAGACGACAACAAGAAATTTGAATGTGAAATCTAAGGATAAAGTTATTCTCAAAAAGGTGAAAGTTGGAATTGTAGGGGCTGAAAAATTTGGTGACTTTGAGGAGTGGTTCAATTACAGGCTTTCCCGAGCAGCTCCTGAAACATGTGCTGAATTCCTGGGAAGTTTTGTAGCTGATAGAACAAATTCAGAATTCATAAAGGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGACCGCACTCTTGCTGATTACATGAAAGATCGTAACTTTCCTTCGAACTTAGAGTCTGTCATGTTTGGAAGTGTCTTGCAAGGTGTAGACTCTTCTAAACGAAATGCGTTGATCATCAAGCAAATAATGCGCCAGATCATTACATGTCTTAAGAAAATTCATGACACGGGCATTGTTCACCGAGATGTAAAGCCTGCCAACTTAGTAGTCACTAGACGGGGGCAGATTAAACTCATAGATTTTGGTGCAGCAACGGACCTTCGAATTGGAAAGAATTATGTACCCAACAGTACCTTACTGGATCCTGACTACTGTCCCCCAGAATTATACGTTCTCCCGGAAGAAACACCAAATCCTCCTCCAGAGCCAGTTGCAGCTTTCCTTTCACCAATCTTGTGGCAGCTGAACAGTCCCGATCTGTTTGACATGTACTCTGCTGGGGTTGTGCTGTTGCAAATGGCAATACCATCCTTGAGGTCTCCAGCTGCTATAAAGAACTTTAAGTTGGAAATCAAAACTTGTCAATATGATTTGATCAAATGGAGAGATTATACACGCCGGAGGCCCGACTTTGAAATTCTCGACTGCGACTCGGGTAGAGGGTGGGACTTAGCAACCAAGCTTATTTGTGAGAGAGGTCCCTTTAGAAGAGGACGTTTATCTGCTGCAGATGCTTTGAGGCATCCTTATTTCCTTCTGGGTGGGGATCAAGCTGCTGCAGTCCTTTCAAAATTGAGCTTAAACAGAAATTGTTTGTGTCTGAAGCTGTACAGCAGTCACTTTCCTGTTTCCAGGATGAGAAACAGAGTAAATAATTGCAATATATGA 1602 0.4288 MASLLLRPPPYTLQHKLITTSFPPLKSNSPNNVSFLTTHRFKSSNPIKCKAFLDNVPNDLFENTIYLNQFPVLRSGLVQFQSLTEDLSDFQKWGFLVFAGLTWIYLTARPGVLIGAIDAYLLAPLQLGLDNLRGRRNLKRTDFMIGDKIGEGSFGVVYSGVVVPKNGGYVEENVQKRGRGKTTTRNLNVKSKDKVILKKVKVGIVGAEKFGDFEEWFNYRLSRAAPETCAEFLGSFVADRTNSEFIKGGKWLVWKFEGDRTLADYMKDRNFPSNLESVMFGSVLQGVDSSKRNALIIKQIMRQIITCLKKIHDTGIVHRDVKPANLVVTRRGQIKLIDFGAATDLRIGKNYVPNSTLLDPDYCPPELYVLPEETPNPPPEPVAAFLSPILWQLNSPDLFDMYSAGVVLLQMAIPSLRSPAAIKNFKLEIKTCQYDLIKWRDYTRRRPDFEILDCDSGRGWDLATKLICERGPFRRGRLSAADALRHPYFLLGGDQAAAVLSKLSLNRNCLCLKLYSSHFPVSRMRNRVNNCNI 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0271 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Lele41g0271 533 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 66 508 - -
Lele41g0271 533 ProSiteProfiles Protein kinase domain profile. 143 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele41g0271 533 Gene3D Phosphorylase Kinase; domain 1 126 256 - -
Lele41g0271 533 Pfam Protein kinase domain 296 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele41g0271 533 Gene3D Transferase(Phosphotransferase) domain 1 287 491 - -
Lele41g0271 533 SMART serkin_6 143 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele41g0271 533 SUPERFAMILY Protein kinase-like (PK-like) 141 490 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0271 Lele-ChrLele41 2215992 2219447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0271 143 345 MAP Kinase Kinase Kinase AT3G13530 24.272 9.66e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Lele41g0271 Pkinase 8.1e-21 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0271 41 2215992 2219447 Lele41g0271 41 2215992 2219447 ECH
Lele41g0271 41 2215992 2219447 Lele43g1096 43 19385190 19394686 hybridization
Lele41g0271 41 2215992 2219447 Lele44g1083 44 19506163 19510893 hybridization