Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0251 ATGCATCGCCGACTTCTCGACGCCGGGCTAAGTGTGGCTCCGGCATATGGGAATAAGACCCGTGAATCGTTCGTGGGCGATGTGAACTTCAACGCGAACATGGTGATCATATTGGCGGCTTTGATGTGCGCATTGATATGCGCGCTTGGATTGAACTCGATAGTGCGATGTGTTTTGCGTTGTAGCCGAAGATTTTCCACAGATATCACAGAACAAACAGCTGCTAGGCTTGCTTCAAAAGGCCTGAAGAAACGTCACCTGAGCCAGATTCCGGTGAAAGAGTACGGGCCCGGTGCGAATATTCCAGCGACTGAGTGCCCGATCTGCCTTGGGGAGTTCGAGAAAGGAGATAAGGTGCGAATGCTGCCAAAATGCAATCACGGGTTCCATGTGAGGTGCATCGACACATGGCTTTTGTCACATTCTTCTTGCCCCAACTGTCGCCATTCCCTTCTAGAGAAATCCACAAATCCAAATCCAAATCCAAATTCAAATTCGAATAGGAGGATTGAAGGAGGAGCAGTCGCCGGATCTCAGGCGCCGGCAGATGGGTCCGGCAACACGCAAGTTCCCGCTGTGGTGGTTGACGAGCGGGCAAGTTGA 603 0.5174 MHRRLLDAGLSVAPAYGNKTRESFVGDVNFNANMVIILAALMCALICALGLNSIVRCVLRCSRRFSTDITEQTAARLASKGLKKRHLSQIPVKEYGPGANIPATECPICLGEFEKGDKVRMLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLEKSTNPNPNPNSNSNRRIEGGAVAGSQAPADGSGNTQVPAVVVDERAS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0251 200 Pfam Ring finger domain 105 148 IPR001841 -
Lele41g0251 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Lele41g0251 200 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Lele41g0251 200 SMART ring_2 106 147 IPR001841 -
Lele41g0251 200 MobiDBLite consensus disorder prediction 154 172 - -
Lele41g0251 200 CDD RING-H2_EL5_like 105 148 - -
Lele41g0251 200 SUPERFAMILY RING/U-box 91 159 - -
Lele41g0251 200 MobiDBLite consensus disorder prediction 154 200 - -
Lele41g0251 200 PANTHER RING-H2 FINGER PROTEIN ATL78 25 160 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0251 Lele-ChrLele41 2066757 2067359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0251 4 158 C3H Transcription Factor Family AT3G10910 58.537 1.70e-58 180
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0251 41 2066757 2067359 Lele41g0251 41 2066757 2067359 ECH
Lele41g0251 41 2066757 2067359 Lele43g1116 43 19539486 19540082 hybridization
Lele41g0251 41 2066757 2067359 Lele44g1102 44 19661860 19662450 hybridization