Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0197 ATGTCTTCTCCTAAACCTGCATTCATCTTCTTCTTCTTCTTTACGTTTGCATCTGCAGGCTCTTCTTCTTCTTCTTCTTCTTCACATGTTAAAGGAGTTGAGAATGTTACAGAGTTTGCTTCTCCTGATGAGAAAGTGAATCTAACAGTGTACTTTGAAAGCTTAAGTGAGCCCTGTGTAACTTTCATCATCAGGAACCTTGTGGAAATCTTCAACAAAGATCTCATCAACATTGCTTATGTGGTTGGCCTCCATGATGAGAAAACATGTCACAATGGACCAGATGAATGTCAGCTAAATCCTCTGGAAGCCTGCGTCCTCAATGTTTCAAATGATGATGTGAACAAACACTATGCTTTGATATTCTGCTTTGAGTTTTTGGCACTAGAAGGCAAGCAAAATAAGTGGCAGAGTTGTTTCAACCAATTGGGTTTGCCTAAGCAGCCTTTTCTTGACTGCTTTAAAGCTGGCAATGGATCTCTGTGTCATAAGTTTCTTCATCAACTTGTTCGTGATGGACTTGTCATTATGCAACGTTATGGTATAAGAGATCTTCGAACTTTGTACCTTTGGTTCTATAAACATCAAACTTTTCTAGAAAGCTCCATCAACATGGAAGACCCTGTAACAGAAGGCGAAGCCCAAGAGGAGAGAGGAGAAGAAGAAGGTAAAGGCGGCGGCGGCCTTATTAGGAGCTGGATGTCCACCACGGTCACTCCTCTGGGAACGAGAACAGGGGAACCTGAAACAGAGGACAACACCAGAAACGAGATTCCCAAGAAGGAAGTTGAAGAAGGTGGCGATGTCGAACGGGGAGGAGAAGGAGGGTTCTTGAATAATATAATTTCCAATTTGTTTTATCAAAGTGATGACGAACAAGATAAGAAAATGGAAGGTGATGAAGAGAAGAACAAGCAAGTGAAAACAGAGGAGGAAGACAGTAATGGCGGCGGCGTCATTGAAAACATAGTCTCCCACTTGCCTAATTCAATCCCAGCTCTTTTTCGTTTTGATAGTTTCCCCATCAGTCTTCATAGGATTGAAGAAACACTTAAAGAGGCTCAATGCCCCAAAGCACTGGATGTTGGACAAGCTGGGTGGTGCCTTTCTATGCACATTATTAGAAATCCTTGTTTCAGCAATCCTATTTCACTTGTTTTCATTTGTGGCATCCATTCAAGTTATGTGCTTAATGTCATGCCCTGGTTGTGCGCACCCAAGCCATCATCTGGACCTCACAAGTCAAGGGAGTGCCTGCCTCTTATCCTTATCCTGCGTAATAGGTTGAAGTATGCTCTCACCTATAGAGAAGTTATTGCCATATTGATGCAGCGCCATGTTGTGGTTGATGGGAAAGTTAGGACAGACAAGACATATCCTGCTGGTTTCATGGGGCAAATAAATGACGCCATCAAACTGGACTTGGAAACTAACAAGATCACTGACTTCATCAAGTTTGATGTCGGTAACGTGGTCATGGTGACAGGAGGAAGGAACAGAGGTCGTGTTGGTGTTATCAAGAACAGGGAGAAGCATAAGGGAAGTTTTGAGACCATCCATGTCCAGGATGCAACTGGTCATGAATTTGCTACTCGTATGGGAAACGTCTTCACAATAGGCAAAGGCACAAAACCATGGGTTTAA 1644 0.4288 MSSPKPAFIFFFFFTFASAGSSSSSSSSHVKGVENVTEFASPDEKVNLTVYFESLSEPCVTFIIRNLVEIFNKDLINIAYVVGLHDEKTCHNGPDECQLNPLEACVLNVSNDDVNKHYALIFCFEFLALEGKQNKWQSCFNQLGLPKQPFLDCFKAGNGSLCHKFLHQLVRDGLVIMQRYGIRDLRTLYLWFYKHQTFLESSINMEDPVTEGEAQEERGEEEGKGGGGLIRSWMSTTVTPLGTRTGEPETEDNTRNEIPKKEVEEGGDVERGGEGGFLNNIISNLFYQSDDEQDKKMEGDEEKNKQVKTEEEDSNGGGVIENIVSHLPNSIPALFRFDSFPISLHRIEETLKEAQCPKALDVGQAGWCLSMHIIRNPCFSNPISLVFICGIHSSYVLNVMPWLCAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVVVDGKVRTDKTYPAGFMGQINDAIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWV 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0197 547 Gene3D - 392 478 IPR036986 GO:0003723
Lele41g0197 547 FunFam 40S ribosomal protein S4 486 547 - -
Lele41g0197 547 SMART kow_9 485 512 IPR005824 -
Lele41g0197 547 MobiDBLite consensus disorder prediction 292 317 - -
Lele41g0197 547 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 466 547 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lele41g0197 547 Gene3D - 486 547 IPR014722 -
Lele41g0197 547 Pfam KOW motif 488 521 IPR005824 -
Lele41g0197 547 Pfam 40S ribosomal protein S4 C-terminus 523 547 IPR032277 -
Lele41g0197 547 MobiDBLite consensus disorder prediction 239 258 - -
Lele41g0197 547 Pfam Gamma interferon inducible lysosomal thiol reductase (GILT) 47 142 IPR004911 GO:0016671
Lele41g0197 547 CDD KOW_RPS4 486 540 IPR041982 -
Lele41g0197 547 MobiDBLite consensus disorder prediction 206 232 - -
Lele41g0197 547 MobiDBLite consensus disorder prediction 292 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0197 Lele-ChrLele41 1586367 1593202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0197 396 547 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 54.587 2.52e-67 216