LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele41g0190	ATGGGTGGTGGCTGTAGGAACAAGACATCATCGCGTAAGAGAAGAAGAAGCGGGAATGACTATGTGATTGACACTCTTGAGAAGTGGAAGAAATACAACAGTGAGCTTGAGTTTGTCAAAAATGGTGGAGCAAAGAAAGGGACGAGTCACAGAGTTCCAGCAAAAGGCTCAAGAAAGGGGTGCATGCGAGGCAAAGGAGGGCCTCAAAACTCAGATTGCAACTACAGAGGAGTGAGACAGAGGATTTGGGGCAAATGGGTGGCAGAAATTCGTGAACCCATCACTGGAAGTCACAGTAATTTGGTAAACAAGAAACCGAATCGCTTATGGCTCGGCACTTTCTCCACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCAGCCAGAGCCATGTACGGGCCTTGTGCTCGTCTGAACTTTCCTGACTATAATATGGAAGGAGACGAAGAAGAAGCCACATGCTCTAATGAGCAAACAGAGGACAAACATGAGTTTGTTCTGGTGAAGACAGAGGAAGAAACAGAGGACTCTGGTGTCATTGGAAGTGAAGCTTCCTTTGGGAAGAATCAGATGGGGGAAATGGCTTCTCAGATTCTGGGATTTTGTACATCTGATCACTCTCAAAATGAGGAGGAATATAAAGCTTCTATAGAGAGGAAATTTGAAGATGAGGAGGGTGTGAACAATTCTGGTTCTAGTAAAGGAAACTCCATGTTTGAAGAAAAAGAAGGTGATGAGTGGCAGAGTGGTCATTTGCCTGTGTATCTGAATAACATGAAGGAGGCAGACTTGGAAGTGGGCTATTATGACTACAGTTTCTTGAGACCTGATTATGACTTCGGCTTATGGGAAGAGAAAAACTTACTTGGTATATGGTTTCCACACATGTCTTCTTAA	897	0.4415	MGGGCRNKTSSRKRRRSGNDYVIDTLEKWKKYNSELEFVKNGGAKKGTSHRVPAKGSRKGCMRGKGGPQNSDCNYRGVRQRIWGKWVAEIREPITGSHSNLVNKKPNRLWLGTFSTALEAALAYDEAARAMYGPCARLNFPDYNMEGDEEEATCSNEQTEDKHEFVLVKTEEETEDSGVIGSEASFGKNQMGEMASQILGFCTSDHSQNEEEYKASIERKFEDEEGVNNSGSSKGNSMFEEKEGDEWQSGHLPVYLNNMKEADLEVGYYDYSFLRPDYDFGLWEEKNLLGIWFPHMSS	298

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele41g0190	298	MobiDBLite	consensus disorder prediction	223	243	-	-
	Lele41g0190	298	FunFam	Ethylene-responsive transcription factor 2	73	142	-	-
	Lele41g0190	298	SUPERFAMILY	DNA-binding domain	74	142	IPR016177	GO:0003677
	Lele41g0190	298	CDD	AP2	73	142	IPR001471	GO:0003700\|GO:0006355
	Lele41g0190	298	SMART	rav1_2	74	147	IPR001471	GO:0003700\|GO:0006355
	Lele41g0190	298	Gene3D	AP2/ERF domain	74	142	IPR036955	GO:0003700\|GO:0006355
	Lele41g0190	298	MobiDBLite	consensus disorder prediction	43	69	-	-
	Lele41g0190	298	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	9	243	-	-
	Lele41g0190	298	Pfam	AP2 domain	73	133	IPR001471	GO:0003700\|GO:0006355
	Lele41g0190	298	ProSiteProfiles	AP2/ERF domain profile.	74	141	IPR001471	GO:0003700\|GO:0006355
	Lele41g0190	298	PRINTS	Ethylene responsive element binding protein signature	75	86	IPR001471	GO:0003700\|GO:0006355
	Lele41g0190	298	PRINTS	Ethylene responsive element binding protein signature	107	123	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele41g0190	Lele-ChrLele41	1550591	1551487	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele41g0190	12	210	AP2-EREBP Transcription Factor Family	AT2G40340	40.807	2.13e-43	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele41g0190		AP2	2.9e-13	CL0081