Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0180 ATGCCCCCTGTCTCCCCTGTAGATATACCAGTAGGAGTGATGCTGGATTTGAAATCATCACTTGGTCACATGGCTCTCAACTGCACCAACATCGCACTCCAAGATTTCTATTCCACTCATGCTTCCTATTCAACCAAGCTCCAACTTCATTTCAATCATTCTGGAAACGATCTCCTAACTGCAGCTTCTGTAGCTTGGGATCTCATAAGTAATAAAAAGGTGCGTGCAATCCTGGGACCTCAAAACTCAGAGCAAGCAAGGTATGTTGTAGAACTTGGTTACAAGTATGATGTTCCTGTGATTTGGTTTTCTCCTTCTGGTCCTTCTCTGTCGCCACCCCGTTCCCGATTCTTCATAAACTCCTACACCATTAGAAGCCATTGCTTTCAGTTCAGAGCTATAGCAGCCATTATAGAAGCTTATAATTGGCAGTCTGTGATTCCCATTTATGAAGAGCCAGAATTCGGCAACGACTTAATCCCATGTCTCACTTATGCCCTGCAAGACATGGACACTCGAATGCCTTACATAAGTCCCATGAGTCAAAGCTTCAAGGATGATCGAATCACCAAAGAGCTTAACAATATCAAAGACAAGAGAACATATGTGTTTATTGTCCATATGACAGTGGAGCTTTGGTCAAGACTTGTGGAACAAGCACAAAAGGCAGGGATGATGAGTGAAGGATACGCTTGGGTACTTACACAAGGCCTATCTTCTGTGATGGATCCTGAAGCTACAGATATAAAAGTGAAAGGCTTCATGGATGGTGCTTTGGGTGTGAGGCCATCATTGGTTGTTCCCTACAAAACTAAACTTGAGCGCGTTTCCTTAGCGAGATCATTATTGAAGTACCATAAAACTCTCTCTCTATATGGCTTGTGGGCTTATGACACTATCACAGCATTGGCCAAAGCGGTAGAGAATGCCAGCTTTGTCAATTCTAATGAAAACAGAGTTGATCTTCGTAACGCAATTAAGGATACTAATTTCCCAGGCCTGTCAGGGAATTTCAGTTTGAGTCAAGGACAACTACAACCATCAAAAGTTGTAGTATACAATGTGGAAGACCAGAGAGAAAACATCATTGGATATTGGAAACCCGGAAGAGGACTTTATCAAAATGACAGTGTAATTAATGAACCACCTGGTACATACCAACTAAGGGATCCGATGTGGCCGGGTAACACAAAGGAGAGACCACCAAAGTTGAAAATTGGGGTCCCAAAAGGGCTTTTTACCGAATTTGTTAATGTTACTTTAGATGGGAAGAGTACTGGCTTGGCTATTGATGTGTTTAACAAAGTGCTTGAAGTTTTGCCATTTAATTTATCTTATGTGTTTGTGCCCCTGAACAACACTAAGGGAGAGTTGACTCCCTTTAGATATGATGATCTTCTCTGCAATATCTCCAGCAAGGAACTTGATGTTGATGTTATAATTGGAGACATTACAATTGTAGTGAATCGCACAAACTGTGTTGATTTCACAATGCCGTATTTAGATTCAAGCGTGTCTATGGTGTTAAAGGTGAGATCCGACGAGAAAAGTGGGGGGATCCTGTTCAAACCTTTTCATTGGTCACTTTGGTTAATTCTTGGGGTGTTCTTTGTGGGCGCAACTGTTATTGTATTTATATTGGAAAGAAAAAAAATCAAATTCAAACGCGATGATGGTGAAAGAAATTTCAACAGCGATGATGGTGAAAGCAAATTCAAACGCTTTGTCCACAATCCCTTCCTTATTTACTTGAGCGATGTTGGGAATTTGAGTGATAAGACATCTAAATGGGTGGTGATAGTGGTGATGTTTCTCTTGGGCGTAGCATTGCAAGTTTACACAGCAAATTTGACATCATTTTTAAATGAGAGGACAATGGCAAAGCCTCCTCCATGGAAGGACGTGCAAGAGATTAAAAGGAACAATAAGTTAGTGGGATATCAAAGCGATTCCTGGGTGAAACACCTTCTGCTCCAAATAGGATTGAAGGAAGAACGATTGAGGCCTTTAGGAAGTCGTCAAGATTACATGGAAGCATTATTTAAAGAAGACAATGATGAACGACGAGTGGATGTTATTTTTGATGAAATTCCTTATCTCACGCTCTTGCTTAACGAATGCGATTCTTGCAAAATGACAGGACCAATCTACAAAGCTGGTGGATTTGCATTTGCTTTTCCGAAGAATTCTACCTTGGTCTCGAATTTTTCAGCTGCAATATTAAATGTGACTCAAAATGTTACGAACTTTCGTGACATGAAGAAGAAGATATCTTTACCTGTCAGCATTGACAAATCCGAATTCAAAAGTGATGTTGAGACGCGAGGTTTGACTATAGAGGACTTTGGAAGTCTTTTCATAATAGTATTGATTGTTTTAGTTCTCTTCATCACCTTTTCAGTTCTTAAAGTTACATCTTTCGTTGTCTGGTTGCATAACAAATTTGTTTCATTCCTAAGTCCCTCCGGTGGAGTTATATTAATTAAACACTAG 2493 0.4027 MPPVSPVDIPVGVMLDLKSSLGHMALNCTNIALQDFYSTHASYSTKLQLHFNHSGNDLLTAASVAWDLISNKKVRAILGPQNSEQARYVVELGYKYDVPVIWFSPSGPSLSPPRSRFFINSYTIRSHCFQFRAIAAIIEAYNWQSVIPIYEEPEFGNDLIPCLTYALQDMDTRMPYISPMSQSFKDDRITKELNNIKDKRTYVFIVHMTVELWSRLVEQAQKAGMMSEGYAWVLTQGLSSVMDPEATDIKVKGFMDGALGVRPSLVVPYKTKLERVSLARSLLKYHKTLSLYGLWAYDTITALAKAVENASFVNSNENRVDLRNAIKDTNFPGLSGNFSLSQGQLQPSKVVVYNVEDQRENIIGYWKPGRGLYQNDSVINEPPGTYQLRDPMWPGNTKERPPKLKIGVPKGLFTEFVNVTLDGKSTGLAIDVFNKVLEVLPFNLSYVFVPLNNTKGELTPFRYDDLLCNISSKELDVDVIIGDITIVVNRTNCVDFTMPYLDSSVSMVLKVRSDEKSGGILFKPFHWSLWLILGVFFVGATVIVFILERKKIKFKRDDGERNFNSDDGESKFKRFVHNPFLIYLSDVGNLSDKTSKWVVIVVMFLLGVALQVYTANLTSFLNERTMAKPPPWKDVQEIKRNNKLVGYQSDSWVKHLLLQIGLKEERLRPLGSRQDYMEALFKEDNDERRVDVIFDEIPYLTLLLNECDSCKMTGPIYKAGGFAFAFPKNSTLVSNFSAAILNVTQNVTNFRDMKKKISLPVSIDKSEFKSDVETRGLTIEDFGSLFIIVLIVLVLFITFSVLKVTSFVVWLHNKFVSFLSPSGGVILIKH 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0180 830 Pfam Bacterial extracellular solute-binding proteins, family 3 416 746 IPR001638 -
Lele41g0180 830 SUPERFAMILY Periplasmic binding protein-like II 401 746 - -
Lele41g0180 830 Pfam Ligand-gated ion channel 747 792 IPR001320 GO:0015276|GO:0016020
Lele41g0180 830 Pfam Receptor family ligand binding region 29 356 IPR001828 -
Lele41g0180 830 Gene3D - 20 348 - -
Lele41g0180 830 Gene3D - 400 520 - -
Lele41g0180 830 Gene3D - 521 658 - -
Lele41g0180 830 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 800 - -
Lele41g0180 830 Gene3D - 126 368 - -
Lele41g0180 830 SUPERFAMILY Periplasmic binding protein-like I 7 402 IPR028082 -
Lele41g0180 830 SMART GluR_14 405 761 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0180 Lele-ChrLele41 1459576 1463323 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0180 8 812 Ion Channels AT2G29100 34.238 5.49e-126 399