Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0179 ATGAGATCAATAATGGCAGAGTTGCAGAAAAGCTTGAAAGCTAGTCTCTTAAGTGAGAGCGTTCTTCTCTTAGTGATATTATGGCTTAGCATCACAACAAGAACTTCCATGGCGGCCACACGAGTACCAGTAGGAGTGATTCTTGATCTGCATTCAACACTTGGCATAATGGTTAACAACACCCTCCACCTCGCCGTCGATGATTACTATTCCAATCATACGGATACTGCCACCAAGATCGACCTTATAGTCCGCAACGTTTCTCAGAACGAAGTCGTCGCCGCTGCAGAACAAGCTTTTGATCTAATAACGAAAGAAAAAGTGCGTGCTATCTTGGGGCCCCAAAATTCAGAGCAAGCAAGGTTTATTGTGAAACTTGGTAACGAATCCAAAGTACCAGTTATTTGGTTTCCAATAACTGGTCCTTCTCTTCTGCCACCTCCTTCCCCTTCCTCCATCTACTCCGATGATCAGGGCCTTAAATATTATTGCTATCAGTTCCAAGCCATAGCTGACACCATTAAAGCTCTTGGGTGGCAATCAATCATTCCCATTTATGAAGAGACTGAATATGGCAGTCACCTTATTCCATGCCTCTCCAATGTTTTCAAAGAAATGGGCATTCGAATGGCTAACGTAACTGCCATGGATTCAGATTCAACAGAATTTGCAATGAACATCACTCTTGACAGCTTAAACAAGACGCGAGCACGTGTGTTTCTTGTCCATATGAGCATGGATCTAGGAGCAAGTTTCATTTTGGCTGCACAAAGAAAAGAGATGATGGGTGAAGGATATGCATGGATACTTACCCAAGAGCTATCTTCTTTGACAGATCCTCTAGTTGTGATTAATAGAACGTTGTATCATAACGATGGATCAATTACTTTCTTTAATGATTATGTGACTTTGAAAAGATACATGCAAGGTGCAATAGGAGTGAGGCCATTGGATTTGATCTCGAGAAAAACGAAGGAACGTAGAGACAAAGAGAGCAATTTCGCCAAAAAGTTCAATAGTGTTCTGACTATCTATGGATGGTGGGCTTATCACACACTCGAAGCTTTGGCTATAGCGGTAGAGAAGGCGCCAGCAGGCAAAGACGCTGGCCTAAAACTTGCCGGTGAAATTTGGGCTACTAATTTCACACGAGATTCAGGGATACACTTTGATTTAAGGCAAGGACAACTAAATCAATCGGAGCTTGAAGTGTACAACGTGGTAGGAACAAGAGAGAGAAGCATCGGATATTGGAGCCCTAGCAGTGGACTGAATTATAGTAAAGATGGTAGTGGTGTGAAATCTGGGGAATACCCACTAAAGGGTCCCCTGTGGCCGGGTGACACATTGGATAAACCACCAAAGTTGAGAATTGGAGTCCCAAGAACAACTTCTTTTCCTGAATTTGTCAATGTAGATGATTCTAGTAATCCGCTGTTTGATGGCTTTGCCATTACTGTGTTCTTAAAAGCTGTCACTGTTTTGCCATTTCCGTTCAATAATTATGAGTTTGTTCCCTTGCCGTACGAAAGTGGAAGTCCCATGAACTACGATGATATTCTCTGCAGCCAAATGCAAGTCGAGGATCTTGATGCTATAATTGGAGACATGACAATTGTGGCAAATCGCACAGAATGTGTGGACTTCACGTTGCCGTATTTAGATTCGAGTGTGGCAATGGTGGTAAAGATGAAGAATGCCTCAAGTGCGGGGATCCTCTTCAAACCTTTCAAATGGTCACTATGGTTAGTTCTTGGTGGGACTTTTGTGGTTGCAACTACTATCATAATTATATTAGAAATATACAAAGCCAACAAAGAAAACAGAGAAATCAAAACCAACCAACAAGACCAAACCGAAGACTTTCGCCTCAACCCCTTCCTTGTTTACAAGATCGATGGTATGGAGTTTGCAAGCAGAGCTGCAGGATGGATGGTGATACTGACGTCACTCCTATTCATCTTAGTGGTGCAAATTTACACGGCGAGTTTAACTTCAATTTTAACACAAGAAAGAAGCAAAGAGCCTTCATTGAAGAACGAAAGCGAGACTAAAAGTAGCGATATACGCGTGGGATATCGAAGTGGGTCGTGGGTGTATGGGCTTCTGATTAACCAAATAGGACTCAATTCGAATCAGTTGACTGCTTTAGCAAGTCGTGAAGAGTACAATTCAGCATTGTTTAGTGGATCCAAAAAAGGAGGAGTGGATGCTATTTTTGATGAAACTCCTTATCTCACTCTCTTCCTCTCCCAATATAAGTCTCGCTTCATGATGATAGGACCACTCTACAAAACTGGTGGATTTGCCTTTGAGGCATTCCCGAAGAAATCTAGCTTGGTGCCGTATTTCTCGGATGCAATCTTAAATGTGACTCAAGATGCGGAGCCATTTCGTGTGCTGAAGGCCAGGAGCTCCTTGCCAACCTCCATTGAAGATTTGGAATTTCAAGACGACAATGATGTATATGCGAAAAGTTTGAAAATAGATAACTTTGGAGGCCTTTACCCTGTCCTAATAACCGTTGTGGCTCTCTTTATAGCCCTTGCCATTCTGAATCCATCAGTGATTCAATGGTTGCGTGATAAGCTGCCTTTCAAGTCGTCAGCTAAGCCTTAG 2619 0.425 MRSIMAELQKSLKASLLSESVLLLVILWLSITTRTSMAATRVPVGVILDLHSTLGIMVNNTLHLAVDDYYSNHTDTATKIDLIVRNVSQNEVVAAAEQAFDLITKEKVRAILGPQNSEQARFIVKLGNESKVPVIWFPITGPSLLPPPSPSSIYSDDQGLKYYCYQFQAIADTIKALGWQSIIPIYEETEYGSHLIPCLSNVFKEMGIRMANVTAMDSDSTEFAMNITLDSLNKTRARVFLVHMSMDLGASFILAAQRKEMMGEGYAWILTQELSSLTDPLVVINRTLYHNDGSITFFNDYVTLKRYMQGAIGVRPLDLISRKTKERRDKESNFAKKFNSVLTIYGWWAYHTLEALAIAVEKAPAGKDAGLKLAGEIWATNFTRDSGIHFDLRQGQLNQSELEVYNVVGTRERSIGYWSPSSGLNYSKDGSGVKSGEYPLKGPLWPGDTLDKPPKLRIGVPRTTSFPEFVNVDDSSNPLFDGFAITVFLKAVTVLPFPFNNYEFVPLPYESGSPMNYDDILCSQMQVEDLDAIIGDMTIVANRTECVDFTLPYLDSSVAMVVKMKNASSAGILFKPFKWSLWLVLGGTFVVATTIIIILEIYKANKENREIKTNQQDQTEDFRLNPFLVYKIDGMEFASRAAGWMVILTSLLFILVVQIYTASLTSILTQERSKEPSLKNESETKSSDIRVGYRSGSWVYGLLINQIGLNSNQLTALASREEYNSALFSGSKKGGVDAIFDETPYLTLFLSQYKSRFMMIGPLYKTGGFAFEAFPKKSSLVPYFSDAILNVTQDAEPFRVLKARSSLPTSIEDLEFQDDNDVYAKSLKIDNFGGLYPVLITVVALFIALAILNPSVIQWLRDKLPFKSSAKP 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0179 872 Gene3D - 37 162 - -
Lele41g0179 872 Gene3D - 570 699 - -
Lele41g0179 872 Gene3D - 448 569 - -
Lele41g0179 872 SMART GluR_14 455 794 IPR001320 GO:0015276|GO:0016020
Lele41g0179 872 SUPERFAMILY Periplasmic binding protein-like II 451 795 - -
Lele41g0179 872 Pfam Ligand-gated ion channel 796 841 IPR001320 GO:0015276|GO:0016020
Lele41g0179 872 Gene3D - 164 357 - -
Lele41g0179 872 SUPERFAMILY Periplasmic binding protein-like I 40 419 IPR028082 -
Lele41g0179 872 Pfam Receptor family ligand binding region 59 409 IPR001828 -
Lele41g0179 872 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 851 - -
Lele41g0179 872 Pfam Bacterial extracellular solute-binding proteins, family 3 519 795 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0179 Lele-ChrLele41 1450981 1454495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0179 11 793 Ion Channels AT5G11180 29.412 1.57e-108 355