Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0173 ATGGAGCCTTTGATACTTGAGCCGTCCTGGTCGTTCTATGAAGGCGTAAGCTCAACTTTTGATCAAGTTGAGCACTTTGACTTCAACGTGGATACTCCTTTGTTCGCTGCTTCAGAGGATGCTTCTTCTTCAGAGATTACCTCCATGGTTCCCTTTCCTTCTACTTTCTTCTCTAATGATCATGTCTATTGTCCAATTGATGAGGACAACCTTCAACTCCCATCATTGATTGATGATTTCTCCATGGATCTTGATGCTTTTGATCCCACTTTGAGTTCTCAAAGTCTGGGAATCCATGGATACGCACAAGAAGATGTTTGGAGTCCAACCCCATCGATGCAATCAGATATGTCTACAGTAGTACAAGCACAGCCATCACTGACGATACCAGAACAAGACAGGGAGATGGAGAACCAGTTGAGTCTTCCTCATCTTCTGGAAGCTATTGGAGAAGCCTTAGAGCAACGACATAACACACTTTCACAAGTGATTATGAGATGTATCAGCCACAAAGTGAGCCCTGTAAGTGATCCTCTTGAACGTCTGGCATTCTATTTGTCCCAAAATCATGAAACTACAGAGCAGGGGACTTTCATCAAACAGGAGGCGCGCAAGAGCTTCCACGATGCTTTCAAGGCTATCTACCAAGGCCTTCCACATGGAAGAATTGCTCATTTTGCAGCCAATTCAACAATTCTAGGATCTATACCATCTGATTCAGATGTCATACATATCATAGACTTTGATATGGGAGAAGGGGGTCAATGGCCTCCATTGATGGAGGCTATCGCTCAACAGCACAAAACTTTGAAACTGAACGCAATCAGATGGGAAGAAGAGGACAGTCCAGATCTTGATTGTGTTTCAACTCAATGGAAATTTGAAGATATCAGAAGGAACCTCTATGAGCATGCCAAGTCATGTGGTTTGAAGTTGAAGGTAGAGGAACAGAGTATAGAGGAATTGGTGACAGAGCTCAAGAAATTGAACAAAAGAGGTGGAAATGGAAATGGATTAAGAAATTTCATGGCCTTCAATTGCATGGTGGGTCTTCCACATATGGGTAGGATCAGAAGTAGGAGACTTGTTTCAGAATTTCTGAGGGTAGCGAAGGATTTTATCAAAAGTTCACCTTCAAACAGGGGAATCATAGCTTTCGGCGATGGAGAAGCCTGTGAGAAACTCAGAAACAGCACAAACTTCATGTCATTCTTTAATGGCCATTTGGTGCATTACCATGCTTTATTAGAATCCATGGAATCAAATTTCCCATTCCAATTCTCAGAGGCAAGAACAGCGGTGGAGAATCTATTCGTGGCACCATATATATCAAGTGAGGGATGGTTTCAGAAGTGGGAGGAGATGAGACAATTAGATCAAAATCTTCAATCAGAAACAGAGTTAGAGGGTCGAAGCTTGAGGGAAGAGACATTAATGGAAGTTGCAGAGATGATGAGAGGAGTCGAAGGGACGTATGAGGTAGGCAAAAATGGCAATGAAATTGTTCTTCAATGGAAAGGAACACAGCTTCTAAGAATTTCAATGTGGGGAAATTAA 1557 0.4232 MEPLILEPSWSFYEGVSSTFDQVEHFDFNVDTPLFAASEDASSSEITSMVPFPSTFFSNDHVYCPIDEDNLQLPSLIDDFSMDLDAFDPTLSSQSLGIHGYAQEDVWSPTPSMQSDMSTVVQAQPSLTIPEQDREMENQLSLPHLLEAIGEALEQRHNTLSQVIMRCISHKVSPVSDPLERLAFYLSQNHETTEQGTFIKQEARKSFHDAFKAIYQGLPHGRIAHFAANSTILGSIPSDSDVIHIIDFDMGEGGQWPPLMEAIAQQHKTLKLNAIRWEEEDSPDLDCVSTQWKFEDIRRNLYEHAKSCGLKLKVEEQSIEELVTELKKLNKRGGNGNGLRNFMAFNCMVGLPHMGRIRSRRLVSEFLRVAKDFIKSSPSNRGIIAFGDGEACEKLRNSTNFMSFFNGHLVHYHALLESMESNFPFQFSEARTAVENLFVAPYISSEGWFQKWEEMRQLDQNLQSETELEGRSLREETLMEVAEMMRGVEGTYEVGKNGNEIVLQWKGTQLLRISMWGN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0173 518 Coils Coil 312 332 - -
Lele41g0173 518 Pfam GRAS domain family 144 516 IPR005202 -
Lele41g0173 518 Coils Coil 260 280 - -
Lele41g0173 518 ProSiteProfiles GRAS family profile. 133 517 IPR005202 -
Lele41g0173 518 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 126 506 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0173 Lele-ChrLele41 1386058 1387614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0173 125 435 GRAS Transcription Factor Family AT5G66770 26.625 6.66e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele41g0173 GRAS 1.4e-35 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0173 41 1386058 1387614 Lele41g0173 41 1386058 1387614 ECH
Lele41g0173 41 1386058 1387614 Lele43g1187 43 20248989 20250554 hybridization
Lele41g0173 41 1386058 1387614 Lele44g1174 44 20286849 20288254 hybridization