Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0170 ATGGAAGGAAGAAAAGAAGGCTCGGAATGCTCCAAAACAAGCCCTTCTAGTTATAATAATTGCAACGAATTATTATTAGAAGAAGCGTGCGAGAGCGAGAGCAAGACCAATGAAGAGGAAGAGGAGGAAGAAGAAGAAGGTAAGAAGAATATGAATAATAATGGAGGAAGCTCAAGCAATAGCACAGTGGAAGAGACGACGGAGAAGAAGCCGTCGGTGAGGCCTTATGTGAGATCCAAGATGCCAAGGCTCCGATGGACTCCTGATCTTCACCTTCGCTTTGTTCATGCCGTTCAAAGGCTTGGAGGAGAAGAGAGAGCAACACCAAAGTTGGTTCTGCAATTAATGAACATCAAAGGCTTGAGTATAGCGCATGTTAAGAGTCATCTGCAGATGTATAGGAGCAAGAAGGTAGATGATCCAAGCCAAGTAATGGCTGATCATCATAGGCACCTTGTAGAAAGTGGAGACAGAAATATCTACAATCTCAGCCAAATTCCCATGCTTCAAGGTTATAATCCCTGCCAACCTTCAACCTTCAGATACGGATATGGGGATAATGCTTCTTTGGGTGTGTATGACAAAATGGTTCGGAGCCCTTTCATGGGTAGGAGTCTGATTGATCATCATGAATCCGGGTCGTCTGGGTTTCACAGCATTTTCCAGGTGGACCCTTCAAATTTTCTGATGCAATCTTCATCATCATCAACAAACAAAGATCATCAAGTTCTCTCATTTGGTGGCCATCATCACGAACCCATATACAATGGAACCAGATTGAGCCGCCAGGATAACACTGATCTTAACTCATTATTGATGACCAATATAGGACCAACAAGAGCAGAAGAAGAACGGTTTCTTCCTATTATGAAGGATCATCATCAGGATCAAACAAGGACGCTGAAAAGAAAGGCTTTTGGAGATCATCATATGGATCAGCATCTTCATCATAATAATCACCACCTTGATTTGGATCTATCACTCAAGTTAAATTCAAGGGCCGATATTGATGATAATGCACAGAAGAATCGTTTGGAGGAGAATGATGAAGTCGATAGCAATCTCTCACTGTCTTTGTATTCTCAAATTTCCTCGTTTTCTAATACTAACATTAATAAGGAAGGAGAACACAGTGAAAAGGAGAAATCAAGGAGGGAAAGGGCTAGTACACTGGATCTGACTATATGA 1188 0.4175 MEGRKEGSECSKTSPSSYNNCNELLLEEACESESKTNEEEEEEEEEGKKNMNNNGGSSSNSTVEETTEKKPSVRPYVRSKMPRLRWTPDLHLRFVHAVQRLGGEERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVDDPSQVMADHHRHLVESGDRNIYNLSQIPMLQGYNPCQPSTFRYGYGDNASLGVYDKMVRSPFMGRSLIDHHESGSSGFHSIFQVDPSNFLMQSSSSSTNKDHQVLSFGGHHHEPIYNGTRLSRQDNTDLNSLLMTNIGPTRAEEERFLPIMKDHHQDQTRTLKRKAFGDHHMDQHLHHNNHHLDLDLSLKLNSRADIDDNAQKNRLEENDEVDSNLSLSLYSQISSFSNTNINKEGEHSEKEKSRRERASTLDLTI 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0170 395 Pfam Myb-like DNA-binding domain 84 134 IPR001005 -
Lele41g0170 395 MobiDBLite consensus disorder prediction 1 76 - -
Lele41g0170 395 MobiDBLite consensus disorder prediction 373 395 - -
Lele41g0170 395 Coils Coil 26 46 - -
Lele41g0170 395 SUPERFAMILY Homeodomain-like 80 136 IPR009057 -
Lele41g0170 395 Gene3D - 81 138 - -
Lele41g0170 395 MobiDBLite consensus disorder prediction 51 66 - -
Lele41g0170 395 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 57 277 - -
Lele41g0170 395 MobiDBLite consensus disorder prediction 368 395 - -
Lele41g0170 395 FunFam Myb family transcription factor 80 138 - -
Lele41g0170 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 138 IPR017930 -
Lele41g0170 395 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 82 137 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0170 Lele-ChrLele41 1355721 1357368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0170 73 167 G2-like Transcription Factor Family AT2G42660 57.798 1.34e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele41g0170 Myb_DNA-binding 1.8e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0170 41 1355721 1357368 Lele41g0170 41 1355721 1357368 ECH
Lele41g0170 41 1355721 1357368 Lele43g1190 43 20282761 20284454 hybridization
Lele41g0170 41 1355721 1357368 Lele44g1179 44 20327781 20329498 hybridization