LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele41g0153	ATGGGGAATTGTTGCAGATCTCCGGCTGCTGTTGCCAGGGAGGATGTAAAATCCAACTTCTCCGGCCACGATCACGGCAAGAGGGACTTCAATGCAGCCAAGAAGAATCGGGTTACGGTTCTTACGGACGTGCCCAAGGAGAATATAGAGGAGAAGTACTTGGTGGATCGGGAGCTTGGTCGAGGTGAGTTTGGTGTTACTTATCTGTGTATTGAGCGAGAAACTAGGGAGCTCCTGGCTTGCAAGAGCATTTCCAAGCGGAAACTCAGGACTGCGGTCGACATTGAGGATGTTAGGCGTGAGGTGGCCATTATGAATAACTTGCCCAAGAGTTCCAGCATTGTGAGCTTGAAGGAAGCTTGTGAGGACGACAATGCCGTGCATTTGGTCATGGAATTGTGCGAGGGTGGTGAGCTTTTTGATCGCATTGTGGCACGTGGCCATTATACTGAACGAGCTGCTGCTGCGGTCACAAGGACGATTGTGGAAGTTGTACAACTTTGTCACAAACATGGGGTTATTCATAGGGACTTGAAGCCGGAGAATTTTTTGTTCGCCAATAAGAAAGAGAATTCACCTTTGAAGGCTATCGATTTTGGCCTGTCTATATTCTTCAAGCCAGGCGAGAGATTCTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCAGAGGTGCTCAAGCGGAACTATGGACCAGAAATAGATATCTGGAGTGCGGGAGTAATTCTATATATCTTGCTCTGTGGTGTTCCCCCATTTTGGGCAGGTAATAGCATTCCCTCTGGCAGTGCCATCTGCGTTGTCATACATGAATCACCACGTCTGGAATAG	831	0.4789	MGNCCRSPAAVAREDVKSNFSGHDHGKRDFNAAKKNRVTVLTDVPKENIEEKYLVDRELGRGEFGVTYLCIERETRELLACKSISKRKLRTAVDIEDVRREVAIMNNLPKSSSIVSLKEACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAGNSIPSGSAICVVIHESPRLE	276

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele41g0153	276	Gene3D	Phosphorylase Kinase; domain 1	54	138	-	-
	Lele41g0153	276	SUPERFAMILY	Protein kinase-like (PK-like)	51	260	IPR011009	-
	Lele41g0153	276	CDD	STKc_CAMK	52	257	-	-
	Lele41g0153	276	Gene3D	Transferase(Phosphotransferase) domain 1	139	273	-	-
	Lele41g0153	276	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	173	185	IPR008271	GO:0004672\|GO:0006468
	Lele41g0153	276	ProSiteProfiles	Protein kinase domain profile.	53	276	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele41g0153	276	SMART	serkin_6	53	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele41g0153	276	FunFam	Calcium-dependent protein kinase 1	55	138	-	-
	Lele41g0153	276	ProSitePatterns	Protein kinases ATP-binding region signature.	59	82	IPR017441	GO:0005524
	Lele41g0153	276	PANTHER	SERINE/THREONINE-PROTEIN KINASE	45	257	-	-
	Lele41g0153	276	FunFam	Maternal embryonic leucine zipper kinase	45	273	-	-
	Lele41g0153	276	Pfam	Protein kinase domain	55	258	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele41g0153	Lele-ChrLele41	1172617	1174875	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele41g0153	1	265	EF-hand Containing Proteins	AT3G51850	86.842	2.54e-173	483

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Lele41g0153		Pkinase	2.7e-61	CL0016