Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0150 ATGGCTTCTAGTCCGCGCACCGTGGAGGAGATCTTCAAGGATTATAGTGCTCGAAGAGCCGGTGTTGTTCGTGCTTTGACTCAAGATGTCGATGAATTTTACGGACTCTGTGATCCAGAAAAGGAGAATTTGTGCCTTTACGGACATCCAAATGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTCCCCCCGGAGCTTCCGGAGCCAGCTCTTGGAATCAATTTTGCTAGGGATGGCATGATTCGCAAGGACTGGCTTTCTCTTGTCGCTGTTCACAGTGATTCATGGCTGCTTTCTGTGGCATTTTATCTTGGGGCCCGTCTCAACCGCAATGAAAGGAAGCGTTTATTTAGCTTGATCAATGATCTTCCCACTGTCTTTGAAGTTGTGACTGAGAGAAAGGCTATAAAGGACAAGCCAACTGTGGACAGTGGAAGCAAGTCCAGGGGTGGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAATCCGAAATTTGCAGATGAGGGTCATGAGGAGGATGAAGATGAGCACAGCGAAACTCTTTGCGGTAGCTGTGGTGGAAATTACAATGCAGACGAATTTTGGATCGGCTGCGATGTCTGTGAGCGGTGGTTCCACGGGAAATGTGTGAAGATTACCCCTGCCAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCCTGCATGAGGAGGAGCAAGCCCTAG 711 0.4866 MASSPRTVEEIFKDYSARRAGVVRALTQDVDEFYGLCDPEKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMIRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKAIKDKPTVDSGSKSRGGTKRSSDGQVKSNPKFADEGHEEDEDEHSETLCGSCGGNYNADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCMRRSKP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0150 236 MobiDBLite consensus disorder prediction 165 179 - -
Lele41g0150 236 MobiDBLite consensus disorder prediction 146 163 - -
Lele41g0150 236 MobiDBLite consensus disorder prediction 139 179 - -
Lele41g0150 236 FunFam PHD finger alfin-like protein 176 232 - -
Lele41g0150 236 SMART PHD_3 183 231 IPR001965 -
Lele41g0150 236 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Lele41g0150 236 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Lele41g0150 236 CDD PHD_AL_plant 183 233 IPR044104 -
Lele41g0150 236 SUPERFAMILY FYVE/PHD zinc finger 173 234 IPR011011 -
Lele41g0150 236 PANTHER CPG BINDING PROTEIN 4 233 IPR045104 GO:0006355|GO:0042393
Lele41g0150 236 Pfam PHD-finger 184 232 IPR019787 -
Lele41g0150 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 231 IPR013083 -
Lele41g0150 236 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0150 Lele-ChrLele41 1143856 1146481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0150 2 230 Alfin-like Transcription Factor Family AT5G05610 80.000 1.07e-121 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele41g0150 Alfin 2.8e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0150 41 1143856 1146481 Lele43g1209 43 20440854 20443593 hybridization
Lele41g0150 41 1143856 1146481 Lele44g1202 44 20543079 20545883 hybridization