Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0143 ATGAGTACTCTTCAACAAGGGGCATTGATCACGGAGAATGGCCACATCAAGGGTTTGAGCAGGGAGCTGAGGCATGGCAGGACTGCTCATAACAGGTCCTCTTCTTCCTTGCGCAAGAAATCCGACTTAACCCTTGTTTCCAAGGTTCAATGGTGTTTGCTCAGGAATTTGCTCGTCAATTTCCAGGAGGTCATTCTTGGGACCAAGTTGTCTATTCTCTTTCTTGCGATTCCCGTTGCCATCGTCGCCGAAGTCTACAGGTTCGGTCGACCTTTGGTTTTTGCGATGAGCTTACTAGGACTTACACCACTAGCTGAACGCGTCAGCTTCTTGACAGAACAAGTTGCTTATCATACGGGTCCAACAGTTGGAGGACTCTTAAATGCAACATTTGGCAATGTCACAGAACTCATAATAGCAATATTTGCTCTCAGAAATAACAAAATAGCTTTGCTCAAGTATTCTCTCTTGGGTTCAATCCTTTCAAACCTTCTTTTAGTTCTTGGAACCTCTCTCTTCTGTGGTGGAATAGCAAACATTAGAATAGAACAAAAATTTGATAGGAAACAGGTAGATGTGAACTCACTTATGCTGCTGCTGGCATTTTTGTGCCACTTGCTGCCTGTGCTGTTCAGATATTCTGGTATCTCAGCTGCTCTCGATACAGCACCATCTCTCCACTTTTCAAGAGCTGCAAGTATTGTGATGCTGATAGCGTATTTTGCTTACCTTGTCTTTCAACTTTGGACCCATCGCCATTTATTTGAAGCTGTGGATGAAGAAGATGATAATGATAATGTTGCTGAAGCAGCTGTGATAGGATTTTGGAGTGCATTTGCTTGGCTTGCTGGATTGACTGTACTCATTGCTATCCTGTCTCAATTTGTGGTGGACACAATTGAGGGTGCTTCAGATTCATGGAGCCTGTCTGTCAGCTTCCTGAGCATCATCTTGTTGCCAATAGTTGGCAATGCAACTGAACATGCAGGAGCAGTCATATTTGCTTTGAAGAACAAGCTAGACATTTCATTAGGTGTTGCTTTAGGTTCTGCAACTCAGATTTCCATGTTTGTGGTTCCCCTGTGTGTCGTAATTGCTTGGATAATGGGCATCGAAATGGACCTTGACTTCAACCTCCTTGAGACCGGTTCTCTTGCTTTGGCTATTTTAGTCCCATCCTTCACTTTACAGGATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTCTGCTACGTTGTTATTGGGGCATGCTTTTTTGTGCAAAGAACACCACCCGACCAAGCTGATTTTCCAAACATGATCCTTAAACCTGCCACTGAAGCAGCTTTGAGAGCTTAG 1344 0.4405 MSTLQQGALITENGHIKGLSRELRHGRTAHNRSSSSLRKKSDLTLVSKVQWCLLRNLLVNFQEVILGTKLSILFLAIPVAIVAEVYRFGRPLVFAMSLLGLTPLAERVSFLTEQVAYHTGPTVGGLLNATFGNVTELIIAIFALRNNKIALLKYSLLGSILSNLLLVLGTSLFCGGIANIRIEQKFDRKQVDVNSLMLLLAFLCHLLPVLFRYSGISAALDTAPSLHFSRAASIVMLIAYFAYLVFQLWTHRHLFEAVDEEDDNDNVAEAAVIGFWSAFAWLAGLTVLIAILSQFVVDTIEGASDSWSLSVSFLSIILLPIVGNATEHAGAVIFALKNKLDISLGVALGSATQISMFVVPLCVVIAWIMGIEMDLDFNLLETGSLALAILVPSFTLQDGTSHYMKGLVLLLCYVVIGACFFVQRTPPDQADFPNMILKPATEAALRA 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0143 447 TIGRFAM caca2: calcium/proton exchanger 56 421 - -
Lele41g0143 447 TIGRFAM cax: calcium/proton exchanger 74 421 IPR004798 GO:0006816|GO:0015369
Lele41g0143 447 Pfam Sodium/calcium exchanger protein 278 416 IPR004837 GO:0016020|GO:0055085
Lele41g0143 447 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016020|GO:0055085
Lele41g0143 447 FunFam Vacuolar cation/proton exchanger 266 422 - -
Lele41g0143 447 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 425 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lele41g0143 447 Gene3D - 121 262 IPR044880 -
Lele41g0143 447 Gene3D - 263 421 IPR044880 -
Lele41g0143 447 FunFam Vacuolar cation/proton exchanger 121 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0143 Lele-ChrLele41 1081978 1085009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0143 10 432 Antiporters AT2G38170 68.056 0.0 554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1318 37 22238515 22239942 Lele41g0143 41 1081978 1085009 CCT
Lele41g0143 41 1081978 1085009 Lele41g0143 41 1081978 1085009 ECH
Lele41g0143 41 1081978 1085009 Lele43g1216 43 20495459 20498443 hybridization