Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0135 ATGGAGGAAGAAGATGTGAGGGTTGGAGCCAACAGGTATGGAGAAAGGCAACCGATAGGAACGGCGGCTCAGAGCCAAGATGGGAGAGACTACAGTGAGCCACCAGCTGCGCCATTGGTTGAAGTTGGAGAGTTATCTTCATGGTCTTTCTATAGAGCAGGCATTGCAGAGTTTGTCGCCTCTTTCTTGTTCCTCTACGTCACCGTTTTGACTGTCATTGGGGTGGCTAAATCTCCCTCCAAGTGCTCCACAGTTGGCACCCAAGGCATTGCTTGGGCTTTTGGTGGCATGATCTTTGCTCTTGTCTACTCCACTGCTGGTATCTCAGGAGGGCACATAAATCCAGCAGTAACATTTGGGCTGTTTTTGGCGAGGAAGGTGTCGCTGACCAGGACACTGATGTACATAATAATGCAGTGCTTGGGCGCCATCGCCGGAGCCGCCGTTGTGAAGGCCTTCGAACCACATACCTACGAGAGACTTGGCGGTGCTGCTAACACTATCGCTTCTGGCTACTCTAAAAGCTCGGGACTAGGAGCTGAGATCCTAGGCACATTTGTTCTTGTTTATACTGTCTTCTCTGCTACTGATGCCAAGCGAAATGCCAGAGACTCCCATGTTCCTGTGTTGGCACCACTGCCTATAGGGTTTGCTGTGTTTTTGGTGCATTTGGCTACAATTCCTGTGACAGGCACAGGTATCAACCCAGCAAGAAGTCTTGGAGCTGCTCTTATCTTCAACAAGCACCAAGTTTGGCATCAACATTGGATTTTCTGGGTTGGGCCTCTCATAGGGGCAGCTCTTGCAGCCTTGTACCACCAGATTGTGATCAGGGCCATCCCCTTCAAGTCTAACTGA 858 0.5047 MEEEDVRVGANRYGERQPIGTAAQSQDGRDYSEPPAAPLVEVGELSSWSFYRAGIAEFVASFLFLYVTVLTVIGVAKSPSKCSTVGTQGIAWAFGGMIFALVYSTAGISGGHINPAVTFGLFLARKVSLTRTLMYIIMQCLGAIAGAAVVKAFEPHTYERLGGAANTIASGYSKSSGLGAEILGTFVLVYTVFSATDAKRNARDSHVPVLAPLPIGFAVFLVHLATIPVTGTGINPARSLGAALIFNKHQVWHQHWIFWVGPLIGAALAALYHQIVIRAIPFKSN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0135 285 Pfam Major intrinsic protein 44 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele41g0135 285 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele41g0135 285 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele41g0135 285 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele41g0135 285 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele41g0135 285 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele41g0135 285 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele41g0135 285 TIGRFAM MIP: MIP family channel proteins 56 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele41g0135 285 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Lele41g0135 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 281 IPR034294 -
Lele41g0135 285 SUPERFAMILY Aquaporin-like 45 278 IPR023271 -
Lele41g0135 285 MobiDBLite consensus disorder prediction 1 31 - -
Lele41g0135 285 CDD MIP 52 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele41g0135 285 FunFam Probable aquaporin PIP1-2 37 285 - -
Lele41g0135 285 Gene3D Glycerol uptake facilitator protein. 37 284 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0135 Lele-ChrLele41 1027684 1029688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0135 2 285 Major Intrinsic Protein MIP AT3G61430 79.225 1.17e-163 454