Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0122 ATGGACGTGATAAAGTCTCAGCAAATTTCATCGAGGCCCATCGAGAAGGTCATAGTGCATCCTCTGGTTCTTCTCAGCATAGTCGATAACTACAACCGGGTTGCCAAGGACACACGCAAACGTGTTGTCGGCATCTTGCTCGGTAGTTCATTTAAGGGCACCGTCGATGTTAGCAACAGCTATGCAGTGCCATTTGAGGAAGACGACAAGGACCCAAGCATCTGGTTCCTTGACCACAATTACCATGAATCCATGTTCTCTATGTTCAAGAGAATAAATGCCAAGGAGCATGTCGTGGGATGGTATAGCACGGGCCCAAAGCTACGAGAGAACGATCTTGACATTCACAGATTATTCCACAATTATGTCCCAAATCCTGTGCTGGTCATCATTGATGTCCAGCCCAAGGAGCTAGGGATACCTACCAAGGCTTATTATGACGTTGAAGAAGTAAAGGAGAATGCCACGCAAAAGAGCCAGAAGGTTTTTGTTCACGTGCCTTCAGAAATTGCTGCTCATGAGGTTGAGGAAATTGGAGTGGAACACTTGTTGAGGGATGTTAAAGATACAACCATCAGTACACTTGCAACCGAGGTTTCTGGTAAACTTACTGCGCTGAAAGGATTAGATGCTAGATTAAAAGAGATACGGGGTTACCTTGATCTGGTTATTGATGGAAAGCTTCCATTGAACCATGAGATACTTTACCATCTGCAGGATGTGTTCAACCTCCTTCCTAATCTCAACTTGTCAGAGTTAATCAAGGCCTTTGCAGTGAAAACAAATGACATGATGCTGGTCATTTATCTTTCTTCTCTGATCCGAAGTGTCATTGCACTTCACAACTTGATTAATAATAAGATGCTGAACAAGGAGCATGAGAAAGCTGAAGATGCGAAGCCAGTTACAGTTCCTGCTGATATCTACTACCGGAAAGCAAAAGAAGAAGGTTGGCGTGCTCGAAGTGCCTTTAAACTTCTTCAAATAGATGAGGAATTCAACATATTTGAAGGAGTGAAACGGGTGGTAGATCTATGCGCTGCCCCTGGTAGCTGGAGTCAGGTCTTGAGTCGTAAACTGTATCTCCCAGCAAAACTTGCGCCTGATACGAACACCCAAAAGCCTTTCACTTTCCCAATGATGAGCTTTCGCTTGATAGTGTCACCATTATTGACATCGCAAAATGATTATGAACCATGGGATGATGATCTTCCTCTTATAGTTGCTATCGATCTACAGCCAATGGCTCCAATTGAAGGTGTTATTCAGGTGCAGGGCGATATAACTAATGCCCGTACAGCTGAAGTTGTCATTAGACATTTTGACGGTTGCAAAGCTGACCTGGTTGTGTGCGATGGTGCTCCTGATGGTCTTCATGACATGGATGAATTTGTTCAGTCTCAATTGATACTAGCAGGTTTAACAATTGTTACTCATGTACTCAAGGAGGGAGGCAAGTTTATTGCAAAGATATTTAGAGGAAAAGACACAAGCCTTCTATACTGCCAGCTGAAGTTATTTTTTCCTGTAGTGACTTTTGCAAAACCAAAAAGCAGTCGAAATTCTAGCATAGAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGCTTCAATCCCAAAGATTTGCATCGCCTGCTAGAGAAGGTTGGAAGTCCCTCAGGGGCAGATGATATAGATTGTAGGAGTGGGTGGTTGGAAGGACCAAACAAGGTTTATATTCCGTTTTTAGCTTGCGGGGACCTGAGTGGGTATGATTCTGATCGCTCATATCCACTGCCTAAAGTTGCTGAGGGAACATATCAGAGCTTGGATCCTGTACAGCCACCTATTGCCCCTCCTTACAAGAGAGCCCTCGAGTTGAAAAAGGCTTCCACTCAGGGAATCCGACAACTTGAAAATCTCTCCTTGGATTCTTCATAA 1926 0.4387 MDVIKSQQISSRPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGILLGSSFKGTVDVSNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHRLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLDARLKEIRGYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNLSELIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDAKPVTVPADIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLAPDTNTQKPFTFPMMSFRLIVSPLLTSQNDYEPWDDDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGADDIDCRSGWLEGPNKVYIPFLACGDLSGYDSDRSYPLPKVAEGTYQSLDPVQPPIAPPYKRALELKKASTQGIRQLENLSLDSS 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0122 641 Gene3D Vaccinia Virus protein VP39 317 539 IPR029063 -
Lele41g0122 641 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
Lele41g0122 641 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 14 293 - -
Lele41g0122 641 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 302 534 IPR015507 GO:0001510|GO:0008168
Lele41g0122 641 Pfam FtsJ-like methyltransferase 318 533 IPR002877 GO:0008168|GO:0032259
Lele41g0122 641 ProSiteProfiles MPN domain profile. 17 151 IPR037518 -
Lele41g0122 641 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele41g0122 641 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Lele41g0122 641 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele41g0122 641 Gene3D Cytidine Deaminase, domain 2 9 194 - -
Lele41g0122 641 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 317 533 IPR029063 -
Lele41g0122 641 Hamap Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase [TRM7]. 298 592 IPR028590 GO:0008033|GO:0008175
Lele41g0122 641 FunFam 26S proteasome non-ATPase regulatory subunit 7 9 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0122 Lele-ChrLele41 923301 932978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0122 19 248 Eukaryotic Initiation Factors Gene Family AT2G39990 29.487 1.40e-25 105