Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0117 ATGAACAGGGGAATTGAAGTTTTCTCTCCAGCTTCTTACCTTCAAAACTCGAATTGGTTGTTCCAAGAAAGCAAAGGAACAAAATGGACCCCAGAAGAGAATAAGCGGTTTGAGGATGCTTTGGCCTTGTACGACAAAGATACTCCAGATCGTTGGTTGAAAGTTGCAGATAAGGTTCCAGGGAAGACGGTGGGAGATGTGATTAGGCAGTACAAACAACTTGAAGAAGATGTTAGTGTCATTGAAGCAGGGTTGATCCCTGACTCTGAGTATGATGATACCAGTTCTTTCACTTTCGAATGTTTCAATAACCCGGGCTTTGATGATTTCAAGACATTCTATACTGTTGGTGAGAAAAGAGGTTCTTCCACTCGACCATCTGAGCAGGAAAGGAAAAAAGGAGTGCCATGGACTGAGGAGGAGCACAGGCAATTTCTGATGGGGCTGAAGAAGTACGGTAAAGGGGACTGGAGAAACATATCTCGTAATTTTGTGACCACAAGGACACCTACTCAGGTAGCTAGTCATGCTCAGAAGTATTTCATCAGGCAGCTTACAGGAGGCAAGGACAAGAGGAGATCAAGCATCCATGACATCACAATTGTCAACCTTGAAACCAAGTCTCCATCAGACAGTCACAGACCTTCTTCTCCTGATCGCTGA 663 0.4434 MNRGIEVFSPASYLQNSNWLFQESKGTKWTPEENKRFEDALALYDKDTPDRWLKVADKVPGKTVGDVIRQYKQLEEDVSVIEAGLIPDSEYDDTSSFTFECFNNPGFDDFKTFYTVGEKRGSSTRPSEQERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITIVNLETKSPSDSHRPSSPDR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0117 220 CDD SANT 136 181 IPR001005 -
Lele41g0117 220 SUPERFAMILY Homeodomain-like 130 184 IPR009057 -
Lele41g0117 220 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Lele41g0117 220 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Lele41g0117 220 MobiDBLite consensus disorder prediction 123 138 - -
Lele41g0117 220 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Lele41g0117 220 SMART sant 133 183 IPR001005 -
Lele41g0117 220 SMART sant 25 77 IPR001005 -
Lele41g0117 220 CDD SANT 28 74 IPR001005 -
Lele41g0117 220 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Lele41g0117 220 MobiDBLite consensus disorder prediction 118 138 - -
Lele41g0117 220 FunFam Transcription factor SRM1 21 88 - -
Lele41g0117 220 Gene3D - 21 87 - -
Lele41g0117 220 Gene3D - 135 185 - -
Lele41g0117 220 MobiDBLite consensus disorder prediction 188 220 - -
Lele41g0117 220 Pfam Myb-like DNA-binding domain 28 74 IPR001005 -
Lele41g0117 220 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Lele41g0117 220 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 216 IPR043363 -
Lele41g0117 220 FunFam transcription factor MYB1R1 135 186 - -
Lele41g0117 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Lele41g0117 220 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0117 Lele-ChrLele41 879696 880787 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele41g0117 Myb_DNA-binding 1.4e-12 CL0123