Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0065 ATGGAAGAAGGTCAATGTTGGATTTGGACAAAGAGAAAGCACTCATCTTTGAGCTCTTATAATAATAGTCAAATGTTCATCTATGGCGATTCATGGGAAGAACAAGCCTTTGCAGAAGATGAGCGTCTTGGTGGCTGTATTTGGCCTCCAAGATCATACTCTTGCAGCTTTTGCAGCAGAGAGTTCAGGTCAGCCCAAGCTCTTGGTGGCCACATGAATGTTCACAGAAGAGATAGAGCTCGACTAAAGCAACCCCGGCCAAGTCCACACAATAAACAAGATGATCAAACCAGCAGTCTTCTTGATCATCAAAATTCTTTCACATCTTCTTATCTGGCTTATTCCAACGCTAACCCTAATTCTGATAATATTCTTACTTCTGATCAGGCTAAATTAGCCCCTCCATTATCTTTGATTCAAGAGAATTCCCCACCACATGATTCTTGTGTTTCATGGTCAAACTTTGCTCAACAAAGATTATATTCTCGAAAGGATGAGAAGATTATGTCCAAGATAGTAGATACTGGTTGTAATAAGGAAGAAGGAGCTGATACTGTGAGCTACAAGAGGAGAAGAATAACAGATGATTCATCATCAATTCCATTGATCTCCTCAAAATCAATTCCAGTTGTTGATAATATCAACTCTCAGATGTTCGAGTTTATTAGTCCTAGTTCCATTGAAGAGCTAGATCTGGAGCTAAGGCTTGGTCACAGTCCTCCCAAGCTACTTGTGTTGATGGAATTTAATCGTCAAAGCACAAAGAAGTTATCAAAGCAGGTAAGATGGAGCCCGGAAGAATCTGGAGCGAGATCTTATACTTGTGCGTTTTGCAAGAGAGGATTCTCAAATGCCCAAGCCTTAGGAGGTCACATGAACATCCATAGAATAGACAGAGCAAAGCTCATCAAACAATCATCTGAAGAAGAAAACTCGCTTTCTCTTGACATCTCAATCAAGAACCCTAGCACTTGTACTTCTGATGATGATGATGATCAGCCTCCTCCTTATAATAAGCCTTCCAATTCAGAAGAGAAGGTTTTGTTTCCGTGGGATTCTGAAACACTTCCTAGTAATCCCTTTTTTTCTGGGAATAATAATGAGGAGAACATGGAAATAGATCTTGAGCTTCGGTTAGGTCATCAATCCCACGAGGCCTCAACTGTGAGCACCAGAGAGTTTTTCTGA 1188 0.4066 MEEGQCWIWTKRKHSSLSSYNNSQMFIYGDSWEEQAFAEDERLGGCIWPPRSYSCSFCSREFRSAQALGGHMNVHRRDRARLKQPRPSPHNKQDDQTSSLLDHQNSFTSSYLAYSNANPNSDNILTSDQAKLAPPLSLIQENSPPHDSCVSWSNFAQQRLYSRKDEKIMSKIVDTGCNKEEGADTVSYKRRRITDDSSSIPLISSKSIPVVDNINSQMFEFISPSSIEELDLELRLGHSPPKLLVLMEFNRQSTKKLSKQVRWSPEESGARSYTCAFCKRGFSNAQALGGHMNIHRIDRAKLIKQSSEEENSLSLDISIKNPSTCTSDDDDDQPPPYNKPSNSEEKVLFPWDSETLPSNPFFSGNNNEENMEIDLELRLGHQSHEASTVSTREFF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0065 395 MobiDBLite consensus disorder prediction 313 340 - -
Lele41g0065 395 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Lele41g0065 395 SMART c2h2final6 273 295 IPR013087 -
Lele41g0065 395 SMART c2h2final6 53 75 IPR013087 -
Lele41g0065 395 Pfam C2H2-type zinc finger 53 77 - -
Lele41g0065 395 Pfam C2H2-type zinc finger 273 296 - -
Lele41g0065 395 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Lele41g0065 395 PANTHER OS07G0101800 PROTEIN 260 382 - -
Lele41g0065 395 SUPERFAMILY beta-beta-alpha zinc fingers 51 295 IPR036236 -
Lele41g0065 395 ProSitePatterns Zinc finger C2H2 type domain signature. 275 295 IPR013087 -
Lele41g0065 395 Gene3D Classic Zinc Finger 250 331 - -
Lele41g0065 395 Gene3D Classic Zinc Finger 50 120 - -
Lele41g0065 395 MobiDBLite consensus disorder prediction 69 100 - -
Lele41g0065 395 MobiDBLite consensus disorder prediction 313 344 - -
Lele41g0065 395 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 300 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0065 Lele-ChrLele41 468812 474830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0065 263 306 C2H2 Transcription Factor Family AT5G06070 61.364 3.22e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele41g0065 zf-C2H2_6 0.002 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0065 41 468812 474830 Lele41g0065 41 468812 474830 ECH
Lele41g0065 41 468812 474830 Lele43g1294 43 21131709 21137594 hybridization
Lele41g0065 41 468812 474830 Lele44g1286 44 21200000 21201642 hybridization