Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0058 ATGGCTTCAGTGGGATCCTCCTATTGGTGCTACAGATGCAATCAGTTTTTTAGGGTTCGAATTGGGGCTGAAGAAACCTTGCTTTGCCCTGATTGTGGGTCTGGTTTTATAGAAGAAATCAGGACTCGTACTCAGTCTCCTTTCCATCGATTCCCTTCACCATCGATGTATGTCGACGATGAATCTAGCTCCGAGCAAGGAGCCAGCCCAAGAATCCGCCGTGGCCCGAGAAACGCCGGCGATCGATCCCCTTTTAACCCTGTTATCGTCCTCAGTGGACCCGCCGATGGCGGTGGCGGTGGAAATGAAGGGGTTGGTATTGAAAGAGGGAACTTTGAGCTTTATTACAATGAAGGTACAGGTTCGGGTCTTCGGCCGCTTCCTGCAAGTGTCACAGAGTTCTTAATGGGTGCTGGATTTGACCACCTTCTTGACCAGTTGACTCATTTAGAAGTCACGGGAATCGGACGATTAAATCAAACTCCGGCATCAAAATCTGCGATCGAATCGATGCCCATCGTCAAGATTGTTGCTACACATGTTTCGGCGGAATCACATTGTGCAGTTTGTAAGGAACCCTTCGAGCTTGACTCGGATGCTCGTGAAATGCCCTGTAAACACATTTACCATTCTGATTGTATCCTTCCATGGCTATCAATTCGCAATTCCTGTCCAGTTTGTCGCCACGAGTTACCTACTGAGATGCGTGGGAGTAGTAGTGGCAGAAACTCCCCTGTGTCCGACGGTGGAAGGGATGATCAGACTGTGGGATTAACCATATGGAGACTACCTGGTGGTGGTTTTGCTGTTGGAAGGTTCACTGGTGGAAGAAGAGCTGCCGAACGTGAACTTCCTGTTGTATATACAGAAATGGATGGTGGATTCAATAGTGTGGGGGTTCCACGGAGGATATCTTGGGAAACGAGTGTGAGGAGATCAAGGGAGTCTCGGGGATTAGGTAGTGCTTTCCGGAACTTCTTCTCACACTTCGGGTGGCTTAGGACTTCCTTCTCTCGTTCTTCCAGAATTGATTCAACTGTGAGCCGAAGAACTCGATCTAATACAATATTATCTAGATTCTCGAGAAGGCGCAACTAA 1098 0.4836 MASVGSSYWCYRCNQFFRVRIGAEETLLCPDCGSGFIEEIRTRTQSPFHRFPSPSMYVDDESSSEQGASPRIRRGPRNAGDRSPFNPVIVLSGPADGGGGGNEGVGIERGNFELYYNEGTGSGLRPLPASVTEFLMGAGFDHLLDQLTHLEVTGIGRLNQTPASKSAIESMPIVKIVATHVSAESHCAVCKEPFELDSDAREMPCKHIYHSDCILPWLSIRNSCPVCRHELPTEMRGSSSGRNSPVSDGGRDDQTVGLTIWRLPGGGFAVGRFTGGRRAAERELPVVYTEMDGGFNSVGVPRRISWETSVRRSRESRGLGSAFRNFFSHFGWLRTSFSRSSRIDSTVSRRTRSNTILSRFSRRRN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0058 365 MobiDBLite consensus disorder prediction 231 251 - -
Lele41g0058 365 MobiDBLite consensus disorder prediction 47 85 - -
Lele41g0058 365 FunFam E3 ubiquitin-protein ligase RING1-like 149 234 - -
Lele41g0058 365 MobiDBLite consensus disorder prediction 236 250 - -
Lele41g0058 365 Pfam Ring finger domain 186 228 IPR001841 -
Lele41g0058 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Lele41g0058 365 CDD RING-H2_RNF181 187 231 - -
Lele41g0058 365 SUPERFAMILY RING/U-box 167 234 - -
Lele41g0058 365 MobiDBLite consensus disorder prediction 47 69 - -
Lele41g0058 365 Pfam Protein of unknown function (DUF1117) 256 361 IPR010543 -
Lele41g0058 365 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Lele41g0058 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 80 232 - -
Lele41g0058 365 SMART ring_2 187 227 IPR001841 -
Lele41g0058 365 Pfam zinc-ribbon 7 40 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0058 Lele-ChrLele41 424481 425578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0058 126 242 C3H Transcription Factor Family AT5G01980 43.590 1.36e-26 108