Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0048 ATGGTGTTGCAGAAGAATTTGAACTACAGTTTTAATGGCTATCAAGTGCCTGTCATTCCTAGAGCTTCGAGAACAACTAGGGGAAGGGGTACAGTCAAGAAGAAGAGAGACGGCAATCAGATACAAGCTTTTGAAATTTTGGCTAGTGTAGCTGGCAACTTTCTGCAGGAGAATGAAAACTCCAATACCAACAATGCTGTCGCAGGAAAGGTTCCTGTCAGTTTTGTTGGAATTAACATAAAGGATAAACAAGAGGAAGAAGCAGGGTCTTTTAAGAGTGATCTCTTTGAGAATGGATGTTGCAGTGAGAATGCCTCTGGCTCGGTCTCTAGTTTGCAAGGGAAGCATAATGACCAAAGGGTTGAACGCTGTTCATCTTGTCTTGGCAATCATCTTGAAGGCCAAGGGCAAAATGTTTTTGAGAAGGAAGCAGATGGACTGATAAAAGAGAATTATGTGAATGAGAAAATTGTTCATGTTACTGGCAGCTCGGCTGGAGTTACAGAACCTGACCACAGGGCTTCTAAAAGGGAAAGCTCAGAAAATTCTGTCGAGAAGCCTTCATTGGAGGGTCTTGGACATGGTTCCAGTGGTAGGAAATTATTTAATAGAGATGATGCCGAAAACTTGGCTAGGTGTGCTCAACCTAGCTCTAAGAATAAGAATACTGGCCCCCTGCCAGATATGCCTTTTCAAAGAGTGAATAGTGTTTCTGGATCGAAAAGTTGTGATGTAGGCCAAAAGTCAAAGAATGGAAGTTTGTATGGAAGTGATTACAGTATTGATAGAGATAATTATATTCTTGAAAGCTCACAGAGGATGTATCCTTTTAAGAAGAGGAAGTTCTTCAATCAGACCTCATCGTCTACATCCGACAGGGGGTCTCATTTTCATGGCATATTCGATTCTTCTGACACCAGAGTTGATGATGTGAACTGCAGTGCAGCAATTGGAGCATCATCCTCTGTAGCTGGGGGTCAACAAGTACATACTAGGTCAAGGGATTGTAATGTGAAGCTTAGCATAAAATCTTTTAAAGTCCCAGAGCTTTTTATTGATATCCCTGAAACTGCAACTATTGGTTCATTAAAGAGGACAGTTATGGAGGCGGTGATGGCTATTTTGGGAGACGAACTGCATGTAGGTATTCTTCTTCAGGGAAAGAAGGTCCAAGATGACAGCAAAACTCTAATTCAGACTGGGATTTCTCAAGATGATAAGCATCATAGATTGGGGTTCATGTTGGAGCCAAGACATACTAAAATTACACCACCTTCATATAATGAAGACCCTTCTTTTCGAACCACTAGTTCGCATCGGGATATATCCAGGGAACCTACATCTCTGATGCTACAACAAAGAACTTATAATGTCTCCCAAGAGCAATCCCTGATTAAATTTGAAAGTTGCGGTGAAGGTGACCTAAATGTGGTCCCATCTCTAGCGGATACTTCCCCTAACAATACCATGTCAAAGTGCCGTGCTCTAGTTGCAGTTCCGGCTATTAACATGGAGGCGCTAGCTGTCATTCCCTTCCGTCGTAAGCCTGGAAATCCTGACTTTGTTCAGCGTCGAATCCGGAGGCCTTTCTCTGTGTCTGAAGTAGAAGCACTGGTTCAGGCAGTTGAAAAACTAGGAACCGGAAGATGGCGTGATGTCAAACAGTGCGCCTTTGACAATGCAAAGCACAGGACTTATGTGGATTTGAAGGATAAGTGGAAGACATTAGTGCACACTGCAAGAATCTCCCCTCAGCAAAGGAGAGGAGAACCTGTTCCTCAGGAGCTCTTGGACAGAGTCTTAGCTGCTCATGCCTATTGGTCTCAACAGCAATGTAAGCATCAAGTTAAGCCTCTTTGA 1860 0.4301 MVLQKNLNYSFNGYQVPVIPRASRTTRGRGTVKKKRDGNQIQAFEILASVAGNFLQENENSNTNNAVAGKVPVSFVGINIKDKQEEEAGSFKSDLFENGCCSENASGSVSSLQGKHNDQRVERCSSCLGNHLEGQGQNVFEKEADGLIKENYVNEKIVHVTGSSAGVTEPDHRASKRESSENSVEKPSLEGLGHGSSGRKLFNRDDAENLARCAQPSSKNKNTGPLPDMPFQRVNSVSGSKSCDVGQKSKNGSLYGSDYSIDRDNYILESSQRMYPFKKRKFFNQTSSSTSDRGSHFHGIFDSSDTRVDDVNCSAAIGASSSVAGGQQVHTRSRDCNVKLSIKSFKVPELFIDIPETATIGSLKRTVMEAVMAILGDELHVGILLQGKKVQDDSKTLIQTGISQDDKHHRLGFMLEPRHTKITPPSYNEDPSFRTTSSHRDISREPTSLMLQQRTYNVSQEQSLIKFESCGEGDLNVVPSLADTSPNNTMSKCRALVAVPAINMEALAVIPFRRKPGNPDFVQRRIRRPFSVSEVEALVQAVEKLGTGRWRDVKQCAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQQQCKHQVKPL 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0048 619 SMART sant 526 579 IPR001005 -
Lele41g0048 619 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 523 581 IPR017930 -
Lele41g0048 619 MobiDBLite consensus disorder prediction 233 247 - -
Lele41g0048 619 CDD SANT_TRF 528 578 - -
Lele41g0048 619 SUPERFAMILY Homeodomain-like 528 609 IPR009057 -
Lele41g0048 619 MobiDBLite consensus disorder prediction 163 247 - -
Lele41g0048 619 MobiDBLite consensus disorder prediction 419 443 - -
Lele41g0048 619 Pfam Myb-like DNA-binding domain 527 576 IPR001005 -
Lele41g0048 619 Gene3D - 518 618 - -
Lele41g0048 619 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 616 IPR031105 -
Lele41g0048 619 SUPERFAMILY Ubiquitin-like 333 418 IPR029071 -
Lele41g0048 619 ProSiteProfiles Ubiquitin domain profile. 338 406 IPR000626 GO:0005515
Lele41g0048 619 MobiDBLite consensus disorder prediction 170 184 - -
Lele41g0048 619 ProSiteProfiles Myb-like domain profile. 522 577 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0048 Lele-ChrLele41 350904 354512 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele41g0048 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0048 41 350904 354512 Lele25g1252 25 8364994 8368405 ECH
Lele41g0048 41 350904 354512 Lele26g1264 26 8317193 8320701 ECH
Lele41g0048 41 350904 354512 Lele27g0831 27 16347726 16351111 ECH
Lele41g0048 41 350904 354512 Lele28g1256 28 8351355 8354864 ECH
Lele41g0048 41 350904 354512 Lele41g0048 41 350904 354512 ECH
Lele41g0048 41 350904 354512 Lele43g1311 43 21239927 21244822 hybridization
Lele41g0048 41 350904 354512 Lele44g1303 44 21293703 21300749 hybridization