Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0022 ATGCAAAGCATAGGTGGTAATATGGTCATGGAGGAAGAAAACGCTTTGGATGTTAACGGAAGTGAGATCTGGCTTCAAGATGAACATGACGATCTTCTTGGTGTGAATGATGCCTCTATGTTCTATGCTGATTTCCCTCCTCTTCCAGATTTTCCGTGCATGTCATCCTCTTCGTCATCTTCCTCAACTCCAGCACTTCAAGTCAAGACCACCACGTGCTCCACCACATCTTCATCCTCTACCGCGACGTCATCATCGTCCTCTGCCGTGTCATGGGCAGTTCTGAAGTCCGATGATACAGAGGATAATCTTCCGGTGGAGGAGCCGCCGCTGCAGCCGCCACTATCAACCTTGGCCTCCACCGCTTCAACAGAGCTCCCTTTCCCGCCTGACAAATGTGCTATCGAGATGGAGGAGCCTTTTCCGTACTTGGACATGTTAGAGATCAACGATTTCTTCGACCCTGCATTAGTTTTTCAAGATGAGGATTGCCCATTAGAAGAATATCCCCATAATCATATAGAGAGGCAGAAGGAGCAACATGCAACTACGCTGCAGCAGCAACCAGAGGATCACGATCCACTTGTGCTCTCTAATGATAATAACTGTGAAGAAGAGATTCAAGGAAAAGGAGGAATCCCAGATGGGGAAATGAGCGATGTGTTCTTGGAGTGGCTCAAGACGAACAAGGATAGCGTCTCTGCGAACGACTTGAGGAACGTGAAGCTCAAAAAATCAACCATAGAGTGTGCTGCTAACCGCTTAGGAGGAGGAAAAGAAGCCATGAAGCAATTGTTAAAGCTTATTCTTGAATGGGTTCAAACTAGTCACCTTCAAAACAAACGGCGCTGTAGTAAGGAGAATAATATGAATAACAATAACGATAGTGCACCTTCAAATTTCCTCACAAACCCTAGCTCTAATTCCAACCCAAATTTATTTGGAATGCCTCAGTCATGTCCATGGGTTTCTCCTCCACAGCCTTATGGGACAGATCCGGCAACTATGGTCGCTGTGCCGCCACCTTCTTATCCGGTTATTGGGTATCCGGGTGACCCATATTCAAATGGAGCTTCGAATAATATCAATTCTTACCAACCTGCTAGTACTGAATATAACATGTTGGAAGAAGCCCATTCATGGCCTCCATCTCAGTTCACCGTTGCTGCCCACTGCAACCAGTCAAATGGGGACAACAACGTTCACCAAGCTGGTCCACTAGTTGCGGCGGCATTTGGCGGCTATGTGAATCAGTATTCATATCATTATTTTCACGGCGTGGCGGCTGGTGATAAGTTAATGAGGTTAGGTCCCTCGGCGACCAAAGAAGCAAGTAAGAAGAGGATGGCGAGGCAGAGAAGGTCTTTGACTCATCATAGGAGCCAGAAACACCATAGCCAACTACAGAATCATGATAATAATGATCCACTTGCAAGATTGGGAAGTGATTATAATTGCAACGGAGGTTCTACGAATCCGGCCAATTGGGTATACTGGGGGTCAATGGAGGGAGGAGCAGCTTACGTGGTTCCAGTAGTTCCGGCTGAACCCCGGCCGGCTTTGGATCGGACCGCCATACAAACTCAGAATCATCAAACTAGAGTCCCATCAACAGATCAAAGGCGTCAGGGATTGAAGACGGAGAAGAACTTGAAGTTTCTTCTTCAAAAGGTGTTGAAGCAAAGCGACGTTGGTAGATTGGGGAGAATTGTGTTGCCGAAAAAAGAGGCTGAAACCCACTTGCCAGAATTAGAGGCGAGAGATGGGATTTCTATAGCAATGGAAGACATTGGAACATCTCGTGTTTGGAACATGCGGTACAGATACTGGCCAAACAACAAAAGCAGGATGTATCTGCTGGAGAACACTGGAGATTTCGTGAAGGCGAATGGACTGCAAGAGGGAGACTTCATAGTGTTGTACTCGGATGTCAAGTGTGGCAAATTTTTGATAAGAGGAGTGAAAGTAAGGCAAGCGGCGGGTGGGGCGAAAACAGATCAGAGCAAGAAATCCGGAAAAACGCAGAAAAGCCTCGCCACAGCTGCTGCTGCTAATAACGACTCGCCGTCACCTCTTAAGAAGTTTAGAAAAGAAATGAACTTATACACAAAAATGGAGGGTGGAGAAGGTCTTTGTTCGTTGACTATATAG 2151 0.4654 MQSIGGNMVMEEENALDVNGSEIWLQDEHDDLLGVNDASMFYADFPPLPDFPCMSSSSSSSSTPALQVKTTTCSTTSSSSTATSSSSSAVSWAVLKSDDTEDNLPVEEPPLQPPLSTLASTASTELPFPPDKCAIEMEEPFPYLDMLEINDFFDPALVFQDEDCPLEEYPHNHIERQKEQHATTLQQQPEDHDPLVLSNDNNCEEEIQGKGGIPDGEMSDVFLEWLKTNKDSVSANDLRNVKLKKSTIECAANRLGGGKEAMKQLLKLILEWVQTSHLQNKRRCSKENNMNNNNDSAPSNFLTNPSSNSNPNLFGMPQSCPWVSPPQPYGTDPATMVAVPPPSYPVIGYPGDPYSNGASNNINSYQPASTEYNMLEEAHSWPPSQFTVAAHCNQSNGDNNVHQAGPLVAAAFGGYVNQYSYHYFHGVAAGDKLMRLGPSATKEASKKRMARQRRSLTHHRSQKHHSQLQNHDNNDPLARLGSDYNCNGGSTNPANWVYWGSMEGGAAYVVPVVPAEPRPALDRTAIQTQNHQTRVPSTDQRRQGLKTEKNLKFLLQKVLKQSDVGRLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFLIRGVKVRQAAGGAKTDQSKKSGKTQKSLATAAAANNDSPSPLKKFRKEMNLYTKMEGGEGLCSLTI 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0022 716 MobiDBLite consensus disorder prediction 100 123 - -
Lele41g0022 716 MobiDBLite consensus disorder prediction 440 480 - -
Lele41g0022 716 Gene3D - 545 661 IPR015300 -
Lele41g0022 716 SUPERFAMILY DNA-binding pseudobarrel domain 554 650 IPR015300 -
Lele41g0022 716 MobiDBLite consensus disorder prediction 664 687 - -
Lele41g0022 716 SMART B3_2 555 655 IPR003340 GO:0003677
Lele41g0022 716 ProSiteProfiles B3 DNA-binding domain profile. 555 657 IPR003340 GO:0003677
Lele41g0022 716 MobiDBLite consensus disorder prediction 447 465 - -
Lele41g0022 716 CDD BfiI_C_EcoRII_N_B3 553 654 - -
Lele41g0022 716 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 221 680 IPR044800 GO:0003700
Lele41g0022 716 MobiDBLite consensus disorder prediction 661 691 - -
Lele41g0022 716 FunFam B3 domain-containing transcription factor FUS3 551 666 - -
Lele41g0022 716 Pfam B3 DNA binding domain 556 651 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0022 Lele-ChrLele41 168352 171134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0022 14 690 B3 DNA Binding Superfamily AT3G24650 44.150 3.16e-144 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele41g0022 B3 6.8e-18 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0022 41 168352 171134 Lele41g0022 41 168352 171134 ECH
Lele41g0022 41 168352 171134 Lele43g1334 43 21412676 21415205 hybridization
Lele41g0022 41 168352 171134 Lele44g1324 44 21442141 21444849 hybridization