Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0002 ATGTTAAGCCTCTTACACCATGAAAATCTGGTGAATCTTATTGGATATTGCGCGGATGGAGATCAAAGATTATTGGTGTATGAGTACATGCCTCTGGGATCTGTAGAAGACCGTCTCCTTGCATCGAAAGGACTAGAATATTTGCACGACAGGGCGAATCCTCCAGTTATATACCGAGACTTGAAGGCCTCAAACATATTGCTGCACAAGGGGTTTCATGCGCAGCTGTCGGATTTTGGATTGGCCAAGCTCAGACCCACCGGAGACAAGTCTCATGTCTCCTCCCGAATTATGGGAACCTATAGCTACTGTGTTCCTGAGTATCAAAGAACTGGTCAGCTCACCGTCAAATCTGATGTCTACAGTGACTGTGTCGTTTTACTGGAACTCCTCACCGGAAAGCGAGTCATCGACAACACCAGACTCACCCGCCAGCAAAATCTTTTATCTAGAGCTCGCCGATCCCCTTCTTCAAAGAAACTTCCCCGCAGAGCTTTCAACCAAGCGGTGGCCGTGGCCGCCATGTGCCTTAACGACGAGCCCTCCGCCCGGCCTGTGATCAGAGACGTAGTTACCGCCCTTACTTTTCTCGGCACAGACCCTGACATCATTCCCCCGTCGTCACCACCGCAACAACATTCCCACCTTCTTCTTAATGACGCCGTTGCCGAACGTCAACGAGCCGTCGCTGAAGCCATAAAATGGGTTCAGCTTCTAGGAATAATGCTCTACACAGACCAAATGCAAATTCTTCCTCTTTAAGATATGAATGATAAAGCTTGGAATTGGGCTATAGGATTGACGTATATAGTATCTGTGGCATCAATTTGGATTGCTGCCAGCTTCGTAGTTCAGTCTGTTGTAGATGCTGGGGTATCACCATTCCTTATCACATACATCTGCAATTCATTGTTTGTGGTGTACATTCCGATTATTGAGATTGGGCGATATTTGGAGGATTCTTATGGGAGTTTATGGTTTTGGAGGAGTGAGGAGGAAAGTAACGATTTAGAAGTGCTAGGGGAATCAGAGCAGGCTATTCTTCTCGAAGACAATGGTGCCAGTAACGAAGCCCGTTCATCCTTGCCTGATGAAGAGACTGTCAGTCAGAAGAGGAATAGTAGTGAAGGGACATTGCCCGATCAAGGTAGTCTGACTGATGATCTTAAGAATCAATTGGATGCAAAAGGGCGTTGGACGCGATACAGGGTCGCTAAAGTTAGCCTATTGATATGCCCATTTTGGTTCTTTGCCCAACTCACTTTTAACCTCTCGCTGAAGTATACTACGGTCACATCGAATACTATCTTAAGCAGTGCTTCCAGTCTCTTTACATTCTTGGTCTCTCTAGCAATTTTGGGTGAGAAATTCACTTGGATAAAGCTCTTTAGTGTTCTTCTTTGCATGGGAGGAACAATAATTGTAAGTCTTGGTGATTCACAAAGTGGTTTAAGCACAATTGCTTCAAATCCTTTTCTGGGAGACATTCTCGCTCTTGTTTCAGCAGCTTTATATGCAGTTTATATCACCCTTATACGCAAAAATCTGCCTGATGATGATGGAATGTCTGGCCGTGTCAGCATGGCTCAGTTTCTTGGATATCTTGGGCTTTTCAATCTTTTTATTTTTCTTCCTGTTGCCCTCGTATTAAATTTCACCAAGGTGGAACCATTTCATTCCCTCACCTGGAAGCATCTCGGCCTGATTATTGGTAAAGGATTGCTGGATAACGTGCTGAGTGATTACTTGTGGGCCAAGGCAGTTCTTCTAACATCAACCACGGTGGCTACGGCCGGACTTACGATTCAGGTGCCATTAGCAGCCATCGTTGACAGTTTGACTGGCCATGCACCTGGCCTGCCGGATTGCCTGGGAGCAGTGGCTGTGATGATTGGCTTTGCTGGAATCAATATTCCCTCTGATGCCTTCAAAAAATCAAGAGAAGTGAGCGTTGAGTTGGAAAACGAGGGTGTTAATTCCACAAGCCAACATTCAGGTGTCATGTCATAG 2010 0.4577 MLSLLHHENLVNLIGYCADGDQRLLVYEYMPLGSVEDRLLASKGLEYLHDRANPPVIYRDLKASNILLHKGFHAQLSDFGLAKLRPTGDKSHVSSRIMGTYSYCVPEYQRTGQLTVKSDVYSDCVVLLELLTGKRVIDNTRLTRQQNLLSRARRSPSSKKLPRRAFNQAVAVAAMCLNDEPSARPVIRDVVTALTFLGTDPDIIPPSSPPQQHSHLLLNDAVAERQRAVAEAIKWVQLLGIMLYTDQMQILPLXDMNDKAWNWAIGLTYIVSVASIWIAASFVVQSVVDAGVSPFLITYICNSLFVVYIPIIEIGRYLEDSYGSLWFWRSEEESNDLEVLGESEQAILLEDNGASNEARSSLPDEETVSQKRNSSEGTLPDQGSLTDDLKNQLDAKGRWTRYRVAKVSLLICPFWFFAQLTFNLSLKYTTVTSNTILSSASSLFTFLVSLAILGEKFTWIKLFSVLLCMGGTIIVSLGDSQSGLSTIASNPFLGDILALVSAALYAVYITLIRKNLPDDDGMSGRVSMAQFLGYLGLFNLFIFLPVALVLNFTKVEPFHSLTWKHLGLIIGKGLLDNVLSDYLWAKAVLLTSTTVATAGLTIQVPLAAIVDSLTGHAPGLPDCLGAVAVMIGFAGINIPSDAFKKSREVSVELENEGVNSTSQHSGVMS 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0002 669 MobiDBLite consensus disorder prediction 356 388 - -
Lele41g0002 669 SMART serkin_6 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele41g0002 669 SUPERFAMILY Protein kinase-like (PK-like) 1 219 IPR011009 -
Lele41g0002 669 ProSiteProfiles Protein kinase domain profile. 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele41g0002 669 SUPERFAMILY Multidrug resistance efflux transporter EmrE 396 480 - -
Lele41g0002 669 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Lele41g0002 669 Pfam Protein kinase domain 2 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele41g0002 669 Gene3D Transferase(Phosphotransferase) domain 1 38 201 - -
Lele41g0002 669 PANTHER SOLUTE CARRIER FAMILY 35, MEMBER F5 255 659 - -
Lele41g0002 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 56 68 IPR008271 GO:0004672|GO:0006468
Lele41g0002 669 MobiDBLite consensus disorder prediction 372 388 - -
Lele41g0002 669 Pfam Solute carrier family 35 425 558 IPR009262 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0002 Lele-ChrLele41 21510 26782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g0002 1 235 Glycoside Hydrolase AT3G07070 60.219 6.82e-97 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lele41g0002 SLC35F 2e-10 CL0184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0002 41 21510 26782 Lele43g1349 43 21540711 21545113 hybridization
Lele41g0002 41 21510 26782 Lele44g1346 44 21587850 21590306 hybridization