LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele40g1244	ATGAAGATACGGGGCAATTACTATGAAAATGATCTTTGCGGACTTGGCCACGAGACCAAGTCCTCGGGTGAGGATCTGGTAGGACACGTCCCTTCTCCTTCTCTACATTCTCAGTTCTCTTCGTCCAAGATTTCATCGAATCTCAAAGGGGAATTCATCTTACATACTGAGTCCTTTGTTAAGTTTAATGCCCCAAATTTGACCCTACTTTCGTTGTACTTTCTGGATTTAACTTCCGCGCCTGGTTGCGTTCATTCTCTTCCTAAGATGTCCGCAAATTCTGAGGGCACTTCATCTGCATTAAATGGGCCTAATTCTCAGATTTTTGAGGACACTGCCCTGCTAGCTGGCCATTCTGCCCGGATTGCAGTATGTGCTCTCTGCCAAAAGGCCCTATCACCTGATATTGAGATGACTAATGATCTTGCACCCGTTGGTGTTTGTGGTGATTGTAAATTTTTATTACTCGAAGATTTTGGGACCCATTCCCAATACCCTCAAAGAGTGCATAGGGGAAGATCCAGGTACAGCAGTTCTGAATCAATTGAGAATGGTCTATCACATCAGCTCCCCAGTATGACTAATTCTGTGAGGCAAAATCAGTCCTCTGCATCTGTGGAGGATGATCAGCTTGTTGATGGTGATACCCCCTCTTGGTTATTGCAGTATGCTAGTACCCATACTACCCCTAGTGAGTCTCGAAGATGGAGGCGGGTGTTCTCTGATACTGATAGTGATGGTTTTGATAATAGGAGTTCTCTTTATGGTGAGAATGAATCAAATGTGAGTGTTAGGCGTTACAGAGTCCCCAATGGCGATATTGATTCCTTCTCTTTCAGTGCTTATGGAGGTGACTCTGAAGTATCTATGGATAGATATAGTTTTGTAGGTACAGGAATTTTAAATTTACCAGATGAGGGAGATGAGTTTGATAGTGACACTGATATAGATCCGATGCATGCTGCCCTTAACCATTGGAATTCTGATGATATGGGAGAGGAGGATGAAGATGAGGAAGATGGGGAAGAGGAGGTAGAAGAGGAAGAGGAAAGAGAATGGGAAGTAGCTGGGGCTGAGGAAGCTGAAGCCACTGCCCGCCTTCAAATATTTTTTACCTCAAGTCCAAGTGAGAGAAGTGACCCCATTAATTGGGTCCCACAGTTTCATTTTCCTGAATCTGAGGAAATCTTAAGTAGGAGGATTAGGGATAGATGGCAAACTTACACTGATCACAGCTCCAATTACTTGGAGGAGTCTCATTCACCTCCATATGGTGCAAATTTTGGGGATTATCTTGATGCTAGACAATTTGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAACTCAAGACGAGGAGCACCTCCTGCAGCAGTGTCTTTTGTACATAGTCTGCCCCGGATTGTTATAAGCAAAGAACATGAGAAGCATGATGATCTCGTATGTGCCATTTGCAAGGATGCCTTGGCCACTGGCACTGAAGTAAATCAACTTCCCTGCTCTCACCTTTATCATGCCGGCTGCATTTTGACATGGTTGAGTGCACGAAATTCATGCCCCCTTTGTCGTTATGAGCTCCCAACAGATGATAAGGATTATGAGGAAGGAAGGCGCAATATTGACATTAGAAATGAGATCCATGAAGTGCAGCAGCTAAATGTGATGGATGACAATTCTTCTGATGGAGCTGAAGCAAATGAAGAGGATGGTACTAATCAAGGTGGAGTACAGCAAAGTGAGCTTGTGAACATGGTTCCTGTAGATAATCCTTCTGCAGCGAGTGGCGGTAGAGGAAGATGGTTTTTCTTTGCTGCTGCTCCAATTGTTAGTCTAGTGGGTATTGTTATTGTCTTATGGTTAGGCAACCCTCTAATTGAAGGTAGGAGACAATTGGGCTGCCACAACTTACAGAGGGAAAATCAGCATCAGGTTCATGTATCCACCCCACCCAACCATGGGGAGGATAGAAGCAGAAGATGGTGGTGTTTTTTCTAG	1995	0.4421	MKIRGNYYENDLCGLGHETKSSGEDLVGHVPSPSLHSQFSSSKISSNLKGEFILHTESFVKFNAPNLTLLSLYFLDLTSAPGCVHSLPKMSANSEGTSSALNGPNSQIFEDTALLAGHSARIAVCALCQKALSPDIEMTNDLAPVGVCGDCKFLLLEDFGTHSQYPQRVHRGRSRYSSSESIENGLSHQLPSMTNSVRQNQSSASVEDDQLVDGDTPSWLLQYASTHTTPSESRRWRRVFSDTDSDGFDNRSSLYGENESNVSVRRYRVPNGDIDSFSFSAYGGDSEVSMDRYSFVGTGILNLPDEGDEFDSDTDIDPMHAALNHWNSDDMGEEDEDEEDGEEEVEEEEEREWEVAGAEEAEATARLQIFFTSSPSERSDPINWVPQFHFPESEEILSRRIRDRWQTYTDHSSNYLEESHSPPYGANFGDYLDARQFEDLLEHLAENDNSRRGAPPAAVSFVHSLPRIVISKEHEKHDDLVCAICKDALATGTEVNQLPCSHLYHAGCILTWLSARNSCPLCRYELPTDDKDYEEGRRNIDIRNEIHEVQQLNVMDDNSSDGAEANEEDGTNQGGVQQSELVNMVPVDNPSAASGGRGRWFFFAAAPIVSLVGIVIVLWLGNPLIEGRRQLGCHNLQRENQHQVHVSTPPNHGEDRSRRWWCFF	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele40g1244	664	MobiDBLite	consensus disorder prediction	557	577	-	-
	Lele40g1244	664	MobiDBLite	consensus disorder prediction	330	351	-	-
	Lele40g1244	664	FunFam	E3 ubiquitin-protein ligase RING1-like	443	529	-	-
	Lele40g1244	664	SMART	ring_2	482	522	IPR001841	-
	Lele40g1244	664	MobiDBLite	consensus disorder prediction	166	210	-	-
	Lele40g1244	664	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	337	527	-	-
	Lele40g1244	664	MobiDBLite	consensus disorder prediction	324	351	-	-
	Lele40g1244	664	Pfam	Ring finger domain	482	523	IPR001841	-
	Lele40g1244	664	SUPERFAMILY	RING/U-box	465	530	-	-
	Lele40g1244	664	Coils	Coil	331	351	-	-
	Lele40g1244	664	ProSiteProfiles	Zinc finger RING-type profile.	482	523	IPR001841	-
	Lele40g1244	664	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	442	529	IPR013083	-
	Lele40g1244	664	MobiDBLite	consensus disorder prediction	178	209	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele40g1244	Lele-ChrLele40	22176668	22179725	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele40g1244	115	664	C3H Transcription Factor Family	AT5G01980	41.459	7.61e-118	359