Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1241 ATGCTTACCCTCAATGCTGTCCGCCCTTCCTCGTTATCGGTTGTTCCCTTCGATGGCAGCTATCAAGTATCGGGTCAATTTTTAGTTCCTGCCAATCTAAATTGTTGGTTTGCAAGAGCAAGTAGAAAGTTAAAGACTTTTCAGCTTAAGACTGGATTCTGGGAATCAATAAAAACTGGATTGTTGAAGAATAACACAACACAAGTCATTGACTCACCCTCAACAGATGAAGAAGATGATGATTTTCTGTCTCAAGAGTTTGTCCTTGTTGAAAAGACCGAATTTGATGGAACAATTGAACAAATTATTTTCTCTTCAGGTGGAAACATTGATGTTTATGATCTTCAAGCCCTTTGTGATAAGGTGGGGTGGCCTCGGAGGCCTTTGTCAAAACTAGCTGCTGCTTTGAAGAATAGCTATATGGTGGCCTCACTGCATTCCATCAGAAAGTCGCCTGGCTCGGGTTCAGAGGAAAATGGGAAGATGAAACTAATTGGCATGGCCCGGGCAACATCAGACCATGCCTTCAATGCTACAATATGGGATGTCCTCGTTGATCCTAGCTATCAGGGCCAAGGCCTTGGGAAAGCTCTTGTGGAGAAATTGATTCGGGCTCTTCTGCAAAGAGACATCGGAAATATAACTCTATTCGCAGATAGTCAAGTTGTGGAATTTTATCGCAATTTAGGTTTTGAAGCTGACCCAGAGGGCATAAAAGGGATGTTTTGGTACCCTAAGTACTAA 744 0.4261 MLTLNAVRPSSLSVVPFDGSYQVSGQFLVPANLNCWFARASRKLKTFQLKTGFWESIKTGLLKNNTTQVIDSPSTDEEDDDFLSQEFVLVEKTEFDGTIEQIIFSSGGNIDVYDLQALCDKVGWPRRPLSKLAAALKNSYMVASLHSIRKSPGSGSEENGKMKLIGMARATSDHAFNATIWDVLVDPSYQGQGLGKALVEKLIRALLQRDIGNITLFADSQVVEFYRNLGFEADPEGIKGMFWYPKY 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1241 247 Pfam Acetyltransferase (GNAT) family 112 231 IPR000182 GO:0016747
Lele40g1241 247 FunFam Putative acetyltransferase NSI 106 244 - -
Lele40g1241 247 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 111 236 IPR016181 -
Lele40g1241 247 Gene3D - 106 244 - -
Lele40g1241 247 PANTHER ACYL-COA N-ACYLTRANSFERASE 33 245 IPR045039 GO:0008080
Lele40g1241 247 CDD NAT_SF 157 216 - -
Lele40g1241 247 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 102 247 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1241 Lele-ChrLele40 22162877 22166820 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele40g1241 Acetyltransf_1 2e-14 CL0257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0290 42 2464978 2465562 Lele40g1241 40 22162877 22166820 CCT
Lele43g1075 43 19212805 19213392 Lele40g1241 40 22162877 22166820 CCT
Lele44g1059 44 19303179 19303763 Lele40g1241 40 22162877 22166820 CCT
Lele41g0294 41 2406197 2406838 Lele40g1241 40 22162877 22166820 CCT
Lele37g1417 37 22866707 22870526 Lele40g1241 40 22162877 22166820 hybridization
Lele38g1293 38 23665016 23665979 Lele40g1241 40 22162877 22166820 hybridization