Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1227 ATGGGGTGTTTTACAGTCTTGAAGAGTAAGAAGAAGAAGTCCGAACAGATCAAGAATGTGAAACGGGTCAACCATAAAGAAAATTTACCTGCCGCGGTACTACCTGAACCTCAAACTCATACGCGCTCACTGCAGTCTGCACCTCCTAGTTTTAGGACCAGAGTGAAACCCATCCAACCCATTAATAACATCACCTACAGTAGAATACGAGCATTATCTGCTCCATCAACTCTTGATGCAGCTGAACAAGATGCTTTGTCATCTGTTGGGTATGAGGAACAAGATGAGTCAAAATACCGGGCTGGATCAATAAAGGAGCAGCGTTCATCCAGTCCACAACCTTTACCTCTCCCATGTCCTCAGTCTTGTGGTTCATTAAAGGCAACAAGTAGCTTTAAGTCAGGCACAGCTAGTGGTCCTCTCCATGCTTCGGGTCCTTTGCCACTGCCACCTACTGGATCACTTCGAAACTTTACATATGAAGAAATTTCTGCTGCTTGCCACAGTTTCTCTTCAGATCGGTGCATGTCAGAAGGTCTTTCTTCCACCATATTTAAAGCTTCTTTCGGTGATGAGGCTTCAAGCTCGAAGAAGGTTGAAGCTACTGTCACTCGCCTTTATCCATCTGCTCAGGGCTTAAAGGAATTCGTTAATGAGGTTAATATCATTGCATCTTTGCAACACCCACACCTTTGTAAATTGCTTGGTTTTCATGCATGTGAGGGTTCAGAACAGAGAATGTTGGCTTATGAGAGGCTATATCATGGAAGCTTGGACCGCCTGTTGCATGGAAGATCTGATGGGCCACCTATTGATTGGAATACAAGGATGAAAATTGCTTTATGTGCTGCACAAGGTCTTGCTTTCTTGCATGAAGAAGGCCCTTTCCAGGCAATGTATAATGAATTTTCAACCGCTAATATTCAGATTGACAAAGATTTTAGTGCAAAGCTTTCAGGTTATGGTTGTGTTGGACATATTCCTGAGGAAGAGGTTTCGAGCAATTCAACGGCTGTTGGAAACTTATCTGTAGTGACTCTGGAAAGAGGAATGCTCACTCCAAAGAGCAACGTTTGGAGCTTTGGAATTGTTCTTCTGGAGTTACTTACTGGAAGAAAGAATCTCGACAGCCGTCACCCCAAAGAAGAGAGGAACTTAGTGAAGTGGAGTCGACCTTTCCTTGCAGATGATTGTCGACTGTCATTGATCATGGATCCTCAACTTAAAAGCCGGTTTCCTTCCAAAGCAGTGAGGACAGTATCTGACATTGCACTGAGGTGCCTTCAAAATGAGCCATCAGAGAGACCCACCATGAGAACTGTGGTAGAGCGTCTCAGAAAAATACAGGATATGAAGCACTCTTGTCGGTTTCCGCTGCAAGAGCCTGGCGCAATTTCCAGAAAACAGATGTCAAGGCTTGTTCCTCCACCCTTTTGTTGGAGGAGCTCGATCGGCAGGAATCCCCGAAAGTCATCATCCTCTGTCTCTAGGAGGGCTAGTTGTGATGCAGAAGCTGACAGGAAAGAAACATTGCAGGTAATCATTAGGGAAGGGATTTACGCCTTAACAAGCAACGACATCAAAGTGGGTACTAACATTGAAGTTGATGGTGCTCCTTGGCGCGTGTTGGAGTTTCTTCACGTCAAACCTGGTAAAGGAGCGGCTTTTGTGAGGACCAAAATGCGAAATTATATTACAGGGAACACTGTGGAGAAAACATTTCGAGCTGGGAGTTCGATATCACTGCTTAGTGAGTTTTGGTATCAGAGGGTTAGAAGGACTGCTGAGGGTCCTCTCAATGTTCCTAGGTTGTTATCTTATCATACATGTCCACAGAATACATTTGAGGAGATTCGTCTCTTAGAATCAGAAGTTGGTGGCAGGAAGAAATGGCTGAAAGAGGGAATGGACTGCAATTTGCTGTTATGGAATGGAAAAGTTATTGATCTTGAACTTCCCATCACGGTAAAACTCTATGTAGTTGATGTGGATCCAGGACTTAAGGGTGACACTGCCCAAGGGGGATCAAAGCCTGCAACTCTTGACACTGGCGCTGTTGTGAACGTCCCACTCTTCATAAACACAGGCGACGAGATATTGGTGGACACAAGAACTGGGCAGTACATGAGTCGTGCTTAA 2139 0.4474 MGCFTVLKSKKKKSEQIKNVKRVNHKENLPAAVLPEPQTHTRSLQSAPPSFRTRVKPIQPINNITYSRIRALSAPSTLDAAEQDALSSVGYEEQDESKYRAGSIKEQRSSSPQPLPLPCPQSCGSLKATSSFKSGTASGPLHASGPLPLPPTGSLRNFTYEEISAACHSFSSDRCMSEGLSSTIFKASFGDEASSSKKVEATVTRLYPSAQGLKEFVNEVNIIASLQHPHLCKLLGFHACEGSEQRMLAYERLYHGSLDRLLHGRSDGPPIDWNTRMKIALCAAQGLAFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEVSSNSTAVGNLSVVTLERGMLTPKSNVWSFGIVLLELLTGRKNLDSRHPKEERNLVKWSRPFLADDCRLSLIMDPQLKSRFPSKAVRTVSDIALRCLQNEPSERPTMRTVVERLRKIQDMKHSCRFPLQEPGAISRKQMSRLVPPPFCWRSSIGRNPRKSSSSVSRRASCDAEADRKETLQVIIREGIYALTSNDIKVGTNIEVDGAPWRVLEFLHVKPGKGAAFVRTKMRNYITGNTVEKTFRAGSSISLLSEFWYQRVRRTAEGPLNVPRLLSYHTCPQNTFEEIRLLESEVGGRKKWLKEGMDCNLLLWNGKVIDLELPITVKLYVVDVDPGLKGDTAQGGSKPATLDTGAVVNVPLFINTGDEILVDTRTGQYMSRA 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1227 712 SUPERFAMILY Nucleic acid-binding proteins 610 653 IPR012340 -
Lele40g1227 712 Gene3D - 655 712 IPR012340 -
Lele40g1227 712 SUPERFAMILY Nucleic acid-binding proteins 655 712 IPR012340 -
Lele40g1227 712 ProSitePatterns Elongation factor P signature. 677 696 IPR013852 -
Lele40g1227 712 SMART Elong_fact_P_C_2 656 711 IPR015365 GO:0005737|GO:0043043
Lele40g1227 712 SUPERFAMILY Protein kinase-like (PK-like) 148 454 IPR011009 -
Lele40g1227 712 SMART EFP_2 606 648 IPR001059 GO:0003746|GO:0006414
Lele40g1227 712 Pfam Elongation factor P, C-terminal 656 711 IPR015365 GO:0005737|GO:0043043
Lele40g1227 712 SUPERFAMILY Translation proteins SH3-like domain 523 581 IPR008991 -
Lele40g1227 712 CDD S1_EF-P_repeat_2 656 711 IPR015365 GO:0005737|GO:0043043
Lele40g1227 712 Pfam Elongation factor P (EF-P) OB domain 611 648 IPR001059 GO:0003746|GO:0006414
Lele40g1227 712 MobiDBLite consensus disorder prediction 38 56 - -
Lele40g1227 712 Pfam Elongation factor P (EF-P) KOW-like domain 524 579 IPR013185 -
Lele40g1227 712 MobiDBLite consensus disorder prediction 85 120 - -
Lele40g1227 712 ProSiteProfiles Protein kinase domain profile. 170 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele40g1227 712 Gene3D - 605 653 IPR012340 -
Lele40g1227 712 Gene3D - 516 582 IPR014722 -
Lele40g1227 712 Gene3D Transferase(Phosphotransferase) domain 1 253 458 - -
Lele40g1227 712 Pfam Protein tyrosine and serine/threonine kinase 175 445 IPR001245 GO:0004672|GO:0006468
Lele40g1227 712 Hamap Elongation factor P [efp]. 521 712 IPR011768 GO:0003746|GO:0005737|GO:0006414
Lele40g1227 712 MobiDBLite consensus disorder prediction 1 56 - -
Lele40g1227 712 PANTHER OS01G0588500 PROTEIN-RELATED 105 449 - -
Lele40g1227 712 Gene3D Phosphorylase Kinase; domain 1 151 251 - -
Lele40g1227 712 FunFam Organellar elongation factor P 516 582 - -
Lele40g1227 712 FunFam Elongation factor P 655 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1227 Lele-ChrLele40 22076212 22085825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1227 149 449 Receptor kinase-like Gene Family AT4G02010 38.436 9.34e-57 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Lele40g1227 PK_Tyr_Ser-Thr 1.1e-23 CL0016