Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1202 ATGCCTGACGGTTACACTAGAGCTCGGGCATCCTACGCCCCTCTACTCCCAAATAACGGTCTTCTCTCCCGTGCTCCCTCCTCCCTCCTCTCCTTCTCTCTTCCATTCTCTTCATATGTAAAGCAACATGCAGTAGCATCTGCATCACTGGCGCTCCGGGGATCCGCTTCCTGTCTACCTCTAACCCGCCTTTTCCGAGCGGTAGAATCGCATGATAGAGATGGATTCGATTCGTCAATGCCTTATATACGCGAAATCGTTCTTGGGAAAGAGGGTGACGCTATTATTGTTCATGAAAATGAGAAGCAGAATTTCGATGGCAATTACTCTGTTTTAGGGTATAAACAAGAATTGGTCGCAAAGACTGAGCCTCTGCTTGCTGAGGAGCCACTGAAACCTTGGATAACATTGAAGAGTAACATAAGGAACGTCAAGAAACAGTATCCAAAACAGAACAAGACCTTCCAGGTGTATGCAACTGAAGCTGATAAGACTTTTCATCCAGAGTATGGGTTGAAAAGGGGAATCACGTTGTTACCTTATGCAGCTTGGGTGAAGAATGAGACCTTAACCTTTGAAATCCGTAGAGAGCCTGGTAAGCAAGTGGATGCTAAAGGTAGAGGAATGGGTAGGATTCAACCTTTGCAATTTGCGGCTGACTATGATGGGGAAGTGGAGAAGATCCATGGGTTTGATTTTGCTGAATGGTCGAAGAACACAGTTTCAAAGAATGATTTTTTTTGTAATGAAAATGGATGTGGAAGATATTTCTGGAATGCCACTGGTGGAAGAGATGTTGCCATGGGCAGAGGAGTTCCAAGTATGAGAAAACATATGAACAGTGCTTGGCACTGTTCTAGGGAGTTCTGATTTCCTCGAGAAACTTTTTGGGTTCCGACTGCAATTTCGTGGGGTCCCCTTGGTTTTGGAATTACCATCGTTGGGCCATTCGATATGGGAGGTTGTTGCAGTTGTGAGATTTCTTGTGGAGGTAAGGTGATTAGGAACATGGATGATAAAGAATACGATCACCGAGAGTGCGAAGATATTGCTTATGCAGATTCCGGAGCTCGAATCAGATTAAGAGGTTCCTCTAAGTTTATATCAATGTACTGCCAACAAGGAAGTAAAGGGATTAACCAAGATGCATTAACAGTTTGGGAGGGCTTAAATGGAGAAAAGGGCATGATCTTCTGTGGTGTGTTTGATGGTCATGGTCCTCTTGGACACAAGGTTTCACAATACATACGGGACAATCTTCCCGCAAAACTCTCTGAATCAATCAAAATGACTCAACAGAAGAAGGTCAGCAAACACTGGGATCCTTATCCTCGAGGAAGAAGTAGCCATGTTAATGTGTATGGTGAAAATGACCAAAACATGTCCCCTGCTTCATGGGAGCGCAGCCTTGTCAAATCTTTCAATGATATGGATAAAGATGTCGCTCGAGACATCAACACCGACAGCTTTTCCAGCGGTACAACTGCTGTAACTGTAATTCAACAGGGAGAACAGCTGATAATTGGAAATTTGGGAGATTCTCGAGCAGTTCTTTGCACAAGAGGAGATAATGACGAGCTTAATCCTGTTCAACTCACTGTGGACTTGAAACCTGATATTCCAAGCGAAGCCATGAGAATACAAAATTGTGAAGGCAGAGTTTTCGCTGCAGCAGAAGAATCGCAAGTGTACAGAATATATATGCCTGATGAGGACGCTCCTGGACTAGCTATGTCAAGAGCCTTTGGAGATTTCTGCCTAAAAGATTATGGCCTCATCTCAGTTCCTGATGTCTTCCATAGAAAAATAACAGAGCAGGATGAATTTGTAGTGTTGGCAACAGATGGGATTTGGGATGTGCTATCGAATGCCGAAGTGATAAGCATTGTTGCTTCAGCGCCAAGGAGGTCCATGGCAGCAAAACTGTTAGTAAGGCATGCTGTTTCTGTATGGAGACACAGGTATCCTAATGCCAAGATCGATGATTGTGCAGTGATATGCTTGTTCCTGCATGAACCGCCGACTTTACCCGATTCTCCATCTGCTAGGAGCAACCTAAATCAAAGGAAGCAATTCAGTCCCCATGACTCTAAACCCACTAGAAACGAAGGCACTGAAAGTTGGTTAGATGATGGCCAGAGTTCTATAATAACATTAGGGCAAGAATTGGATGCTCGTTCAAAATTATCTAGAGCCAACTCTGTGACATATTCAAAATATCCTCGACTCTCTACGGTTGAGTAG 2244 0.4398 MPDGYTRARASYAPLLPNNGLLSRAPSSLLSFSLPFSSYVKQHAVASASLALRGSASCLPLTRLFRAVESHDRDGFDSSMPYIREIVLGKEGDAIIVHENEKQNFDGNYSVLGYKQELVAKTEPLLAEEPLKPWITLKSNIRNVKKQYPKQNKTFQVYATEADKTFHPEYGLKRGITLLPYAAWVKNETLTFEIRREPGKQVDAKGRGMGRIQPLQFAADYDGEVEKIHGFDFAEWSKNTVSKNDFFCNENGCGRYFWNATGGRDVAMGRGVPSMRKHMNSAWHCSREFXFPRETFWVPTAISWGPLGFGITIVGPFDMGGCCSCEISCGGKVIRNMDDKEYDHRECEDIAYADSGARIRLRGSSKFISMYCQQGSKGINQDALTVWEGLNGEKGMIFCGVFDGHGPLGHKVSQYIRDNLPAKLSESIKMTQQKKVSKHWDPYPRGRSSHVNVYGENDQNMSPASWERSLVKSFNDMDKDVARDINTDSFSSGTTAVTVIQQGEQLIIGNLGDSRAVLCTRGDNDELNPVQLTVDLKPDIPSEAMRIQNCEGRVFAAAEESQVYRIYMPDEDAPGLAMSRAFGDFCLKDYGLISVPDVFHRKITEQDEFVVLATDGIWDVLSNAEVISIVASAPRRSMAAKLLVRHAVSVWRHRYPNAKIDDCAVICLFLHEPPTLPDSPSARSNLNQRKQFSPHDSKPTRNEGTESWLDDGQSSIITLGQELDARSKLSRANSVTYSKYPRLSTVE 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1202 747 MobiDBLite consensus disorder prediction 678 713 - -
Lele40g1202 747 MobiDBLite consensus disorder prediction 678 693 - -
Lele40g1202 747 ProSiteProfiles PPM-type phosphatase domain profile. 367 670 IPR001932 -
Lele40g1202 747 PANTHER METHYLTRANSFERASE 56 145 - -
Lele40g1202 747 Pfam Protein phosphatase 2C 393 648 IPR001932 -
Lele40g1202 747 Gene3D - 361 672 IPR036457 -
Lele40g1202 747 SMART PP2C_4 358 668 IPR001932 -
Lele40g1202 747 SUPERFAMILY PP2C-like 364 673 IPR036457 -
Lele40g1202 747 CDD PP2Cc 367 670 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1202 Lele-ChrLele40 21883268 21887771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1202 319 674 PP2C-type Phosphatase Gene Family AT5G01700 50.136 8.44e-114 347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0206 42 1689067 1695291 Lele40g1202 40 21883268 21887771 CCT
Lele43g1151 43 19892322 19898778 Lele40g1202 40 21883268 21887771 CCT
Lele44g1142 44 20047887 20051627 Lele40g1202 40 21883268 21887771 CCT
Lele41g0210 41 1689072 1690052 Lele40g1202 40 21883268 21887771 CCT
Lele37g1385 37 22624776 22626608 Lele40g1202 40 21883268 21887771 hybridization
Lele38g1260 38 23397903 23401980 Lele40g1202 40 21883268 21887771 hybridization