Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele40g1200 | ATGGATTCGTCCTCTTCTCCCATGTGCTTCCAAGGCCTTCCAGAAGCTTCCCCGAAGCCTTACAAGCAAAGCCTCGTCTCAACTCTAATGGAGGCAGCCGCCCTTCGGACTCCTTCCTTCAAAGAAGACACCTACTTAATCTCCCACTTGAAATCTTCCGAGAAGAAGGCTCTTCAAGAGCTCAAAGACAAGCTCAAAGCCTCTGATTCCTCTGAATCTTCCATGTGGGGCTTTTCGCTTCTTGGAGGTGACGAAGGAGCTGATGTCATTCTCTTGAAATTTCTGAGAGCCAGAGATTTCAGAGTCGGAGATGCTCTCAACATGCTCCTGAAATGCTTGGCTTGGAGAAAGGAGTTCGGAGCAGACGACGTCGTTGAGGAGGACTTGGGGTTCAAAGAGCTTGAAGGAGTTATAGCCTATAACGGGCACGACAGAGAGGGACACCCTGTGTGCTACAATGCTTATGGCGTTTTCAAAGATAAAGAAATGTACGAAAGAATATTTGCGGATGAAGAGAAGCTTAAGAAATTCCTAAGATGGAGAGTTCAAGTTTTGGAGAGAGGCATTAAGCTTCTTCAGTTCAAGCCCGGTGGGGTCAACTCCATTATTCAAGTTACTGATCTTAAGGACATGCTTAAGAGAGAGCTTAGATTGGCTTCTAATCAGATCCTCAATCTGTTCCAAGACAATTACCCAGAAATGGTGGCTCGTAAGATTTTCATCAATGTCCCGTGGTACTTCAGCCTGTTGTATTCAATGTTCAGTCCTTTTCTGACCCAACGAACTAAGAGCAAGTTTGTGATCTCTAAGGAAGGAAATGCCGCGGAGACCCTCTACAAATTCATAAGGCCGGAGGATATTCCAGTTCAGTACGGAGGACTGTGCAGACCCATCGATTTGCAGAATGGTCCCCCAAAACCTGCTTCTGAGTTCACTGTAAAAGGGAGGGAGAAAGTGAACATACAAATTGAAGGAATTGAGGCAGGAGCAACGATCACATGGGACATAGTTGTGGGAGGGTGGGAGTTGGAGTACAGTGCAGAGTTTGTGCCGAGTGGAGAAGGAAGGTACGTAATAGCAGTAGAGAAGGCGAGGAAGATGGAAGCATCAGAAGCAGCAATACACAATTCATTCACAGCAAGAGAGGCAGGCAAGTTGGTGCTGTCTGTGGATAACAGTTGCTCTCGCAGGAAGAAAGTTGCAGCTTATCGCTATGTAGTGCGCACATGCAGCAATAACAACTGA | 1245 | 0.4659 | MDSSSSPMCFQGLPEASPKPYKQSLVSTLMEAAALRTPSFKEDTYLISHLKSSEKKALQELKDKLKASDSSESSMWGFSLLGGDEGADVILLKFLRARDFRVGDALNMLLKCLAWRKEFGADDVVEEDLGFKELEGVIAYNGHDREGHPVCYNAYGVFKDKEMYERIFADEEKLKKFLRWRVQVLERGIKLLQFKPGGVNSIIQVTDLKDMLKRELRLASNQILNLFQDNYPEMVARKIFINVPWYFSLLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPEDIPVQYGGLCRPIDLQNGPPKPASEFTVKGREKVNIQIEGIEAGATITWDIVVGGWELEYSAEFVPSGEGRYVIAVEKARKMEASEAAIHNSFTAREAGKLVLSVDNSCSRRKKVAAYRYVVRTCSNNN | 414 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele40g1200 | 414 | SUPERFAMILY | CRAL/TRIO N-terminal domain | 46 | 128 | IPR036273 | - | |
| Lele40g1200 | 414 | ProSiteProfiles | GOLD domain profile. | 275 | 409 | IPR009038 | - | |
| Lele40g1200 | 414 | ProSiteProfiles | CRAL-TRIO lipid binding domain profile. | 126 | 299 | IPR001251 | - | |
| Lele40g1200 | 414 | SUPERFAMILY | CRAL/TRIO domain | 136 | 298 | IPR036865 | - | |
| Lele40g1200 | 414 | FunFam | SEC14 cytosolic factor family protein | 45 | 118 | - | - | |
| Lele40g1200 | 414 | Pfam | CRAL/TRIO, N-terminal domain | 57 | 110 | IPR011074 | - | |
| Lele40g1200 | 414 | Pfam | CRAL/TRIO domain | 136 | 293 | IPR001251 | - | |
| Lele40g1200 | 414 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Lele40g1200 | 414 | SMART | sec14_4 | 133 | 296 | IPR001251 | - | |
| Lele40g1200 | 414 | Gene3D | - | 29 | 118 | - | - | |
| Lele40g1200 | 414 | PANTHER | PATELLIN-1 | 34 | 409 | IPR044834 | GO:0008289 | |
| Lele40g1200 | 414 | SUPERFAMILY | Supernatant protein factor (SPF), C-terminal domain | 310 | 408 | IPR036598 | - | |
| Lele40g1200 | 414 | Gene3D | GOLD domain | 305 | 407 | - | - | |
| Lele40g1200 | 414 | SMART | CRAL_TRIO_N_2 | 87 | 112 | IPR011074 | - | |
| Lele40g1200 | 414 | CDD | SEC14 | 131 | 294 | IPR001251 | - | |
| Lele40g1200 | 414 | Gene3D | - | 123 | 304 | IPR036865 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele40g1200 | Lele-ChrLele40 | 21877727 | 21879642 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele40g1200 | 91 | 288 | Acyl Lipid Metabolism Gene Families | AT1G55840 | 28.155 | 9.24e-13 | 66.6 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele42g0201 | 42 | 1651002 | 1653123 | Lele40g1200 | 40 | 21877727 | 21879642 | CCT | |
| Lele43g1155 | 43 | 19937091 | 19939176 | Lele40g1200 | 40 | 21877727 | 21879642 | CCT | |
| Lele44g1145 | 44 | 20087917 | 20089996 | Lele40g1200 | 40 | 21877727 | 21879642 | CCT | |
| Lele41g0206 | 41 | 1656464 | 1659287 | Lele40g1200 | 40 | 21877727 | 21879642 | CCT | |
| Lele37g1382 | 37 | 22615163 | 22617589 | Lele40g1200 | 40 | 21877727 | 21879642 | hybridization |