Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1173 ATGGATTACAACATTCCTCCTACCAGCAACCTTACCTCATCAACAGCGTCATCTTCGAGGGCAAAGAAGAAGAGAGGGAAGAAAAGCAAGGGAGGAGTGAAGCTTTCCACTGATCCGCAGAGCGTGGCAGCTCGAGAACGAAGGCATAGAATCAGCGATCGGTTCAAGATCTTGCAGAGCATGGTCCCTGGGGGAAGTAAGATGGACACGGTGTCTATGTTGGAGGAAGCGATTCATTACGTGAAGTTTCTGAAAACTCAGATATGGCTCCACCAAACCATGATTAACTCTGTTGACGATGACTACTTTCCATTTCCCAACCATGAACAGTTCCCTTCTCTTCAACAAAACCCATCTTCATCTTCTTCTGGGTGTTCTGTGCAGAATTTGACACAGATACCACTGGAACATTATTGCTGCTTCCACAATGAAGTTGCAACAACAATATTGGACGCCAATATGAACTATTGGCCAGCTTAG 480 0.4562 MDYNIPPTSNLTSSTASSSRAKKKRGKKSKGGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKTQIWLHQTMINSVDDDYFPFPNHEQFPSLQQNPSSSSSGCSVQNLTQIPLEHYCCFHNEVATTILDANMNYWPA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1173 159 MobiDBLite consensus disorder prediction 1 19 - -
Lele40g1173 159 SMART finulus 41 90 IPR011598 GO:0046983
Lele40g1173 159 Gene3D - 40 93 IPR036638 GO:0046983
Lele40g1173 159 Pfam Helix-loop-helix DNA-binding domain 45 84 IPR011598 GO:0046983
Lele40g1173 159 FunFam Transcription factor LAX PANICLE 38 101 - -
Lele40g1173 159 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 95 IPR036638 GO:0046983
Lele40g1173 159 CDD bHLH_AtIND_like 36 95 - -
Lele40g1173 159 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 84 IPR011598 GO:0046983
Lele40g1173 159 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 9 129 IPR045843 GO:0003700|GO:0006355
Lele40g1173 159 MobiDBLite consensus disorder prediction 1 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1173 Lele-ChrLele40 21740455 21740934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1173 27 105 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.367 3.05e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele40g1173 HLH 4.9e-08 No_clan