Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1151 ATGGAGGGCCATCATCCTCATCCTCTTCATCTTCATCTTCAGCAACAACAGCAACCTCAGCAACATCACCAGCAGCAGCAGCAACATAGTATTGGGAGTGTTACGGCTGCGGTTAACGTTGTTGATGTCGGAGACAGGTTTCCTCAATGGAGTATTCAAGAAACGCAGGATTTCTTGATGATGAGGGCAGAGCTGGATCAGGCTTTTATGGAGACGAAGAGGAATAAGCAGTTATGGGAAGTTATTTCCAACAGGATGAAGGAAAAGGGCTACCTTAGAAGCCCAGAGCAGTGCAAGTGCAAGTGGAAAAACCTCGTCACCAGGTACAAGGGATGTGAAACGAGGGAGGCAGAAGCTCTGAGGCAGCACTTCCCATTTTACAATGAGCTTCAGTTGATTTTCGCGAGTAGGATGCAGAGAATGATGTGGGCAGAAGCACAAGGAGGAGGCGGCGGCGGATCGAAGACGAAGGCGCTGGAGAATCTCTCATCAGAAGATGAAGAAGAAGAAGAGGACAATAACAACAACAAAGAAGAGAGTGAAGGAGATCAGAAAGGTACAACGAGTAGAAGCAGAAAGAAGAAGAAGAAGAAGGGAATTAAGGGTAGTAGTAGTGGTAATCATAGTAGTATTAATGAGAGTTTGAAGAACATGAAGGAGATATTGCAGAACTTTATGAGACAACAGATGCAAATGGAGGTACAGTGGATGGAAGCTTATGAAGCGAGAGAGAAGGAGAGAAGAATGAAGGAGTTCGAATGGAGACAAACAATGGAGGCATTGGAGAATGAGAAGATAATGATGGATCAGAGATGGAGAGAGAGAGAAGATCAACGAAGGCTTAGAGAAGAAGGCAGGGCTGAGAAAAGAGATGCTCTTGTCACTGCTCTTCTAAACAAGCTCTCAAGAGAAGACATGTAG 921 0.4517 MEGHHPHPLHLHLQQQQQPQQHHQQQQQHSIGSVTAAVNVVDVGDRFPQWSIQETQDFLMMRAELDQAFMETKRNKQLWEVISNRMKEKGYLRSPEQCKCKWKNLVTRYKGCETREAEALRQHFPFYNELQLIFASRMQRMMWAEAQGGGGGGSKTKALENLSSEDEEEEEDNNNNKEESEGDQKGTTSRSRKKKKKKGIKGSSSGNHSSINESLKNMKEILQNFMRQQMQMEVQWMEAYEAREKERRMKEFEWRQTMEALENEKIMMDQRWREREDQRRLREEGRAEKRDALVTALLNKLSREDM 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1151 306 FunFam Zinc finger and SCAN domain-containing 20 50 111 - -
Lele40g1151 306 PANTHER FI21293P1 17 302 - -
Lele40g1151 306 Coils Coil 159 179 - -
Lele40g1151 306 MobiDBLite consensus disorder prediction 163 177 - -
Lele40g1151 306 ProSiteProfiles Myb-like domain profile. 50 106 IPR001005 -
Lele40g1151 306 MobiDBLite consensus disorder prediction 145 212 - -
Lele40g1151 306 Coils Coil 215 235 - -
Lele40g1151 306 CDD GT1 48 113 - -
Lele40g1151 306 MobiDBLite consensus disorder prediction 11 31 - -
Lele40g1151 306 Gene3D - 50 111 - -
Lele40g1151 306 Pfam Myb/SANT-like DNA-binding domain 49 131 IPR044822 -
Lele40g1151 306 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1151 Lele-ChrLele40 21586069 21587557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1151 23 304 Trihelix Transcription Factor Family AT2G38250 53.901 1.87e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele40g1151 Myb_DNA-bind_4 1.7e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1318 37 22238515 22239942 Lele40g1151 40 21586069 21587557 hybridization
Lele38g1212 38 23106009 23107486 Lele40g1151 40 21586069 21587557 hybridization