Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1147 ATGGCTTCTAGTCCTCGCACCGTGGAGGAGATCTTCAAGGATTATAGTGCTCGAAGAGCAGGAGTTGTTCGTGCTTTAACTCAAGATGTTGATGAATTTTATGGGCTCTGTGATCCAGATAAGGAGAACTTGTGCCTTTATGGACATCCAAACGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCTGAGCTTCCTGAGCCAGCTCTTGGAATTAATTTTGCTAGAGATGGCATGCACCGCAGGGACTGGCTTTCTCTGGTTGCTGTCCACAGTGATTCATGGTTGCTTTCTGTGGCTTTTTATCTTGGAGCCCGTCTTAATCGCAATGAAAGGAAACGGTTATTCAGCTTGATCAATGATCTTCCGACTGTTTTTGAAGTTGTGACTGAGAGGAAACCGTTAAAGGACAAGCCCACTGTGGACACTGGTAGCAAATCTCGGGGCAGCACCAAGAGATCGAATGACGGGCAAGTGAAAAGCAACCCAAAGTTTGCCAATGAAGGTTACGAGGAGGAGGAAGATGAGCATAGCGAAACCCTTTGTGGTAGCTGTGGTGGAAATTATAATGCAGATGAATTTTGGATTGGCTGCGATATCTGCGAGAGATGGTTCCACGGGAAATGTGTGAAAATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCATGAGGCGAGACGATGATTGCAAATTCAAAACGCTGCAGCTAAAGGAAGCTCTACACGTGCAAATGGAAGTACAAAAACGCTTGAGCGATCAACTAGAGGTTCAAAGGAGCTTGAAGCTAAAAATGGAAGCTCAAGGGAAGTACTTAGAGAGACTTGGCCAAAGTTATCAAAACCAAACTATCTCCAGAAAACCTGCTGCTGGGAATAAGCTTCATATGAATACTTCCCCTACGACATCAATGCCTTGTCTTTCTGAGGAATCCGATGATTCCAACGTTAATGTCACACACAAAAAGCAAAGAGTCGTCATCAACGGTGATACTATTAGGGTTAATTTCCCAACTTCTTCTTCATCATCTTCATCACCCGCTCCAGAATTCTGCAACCAAAACTGGGACCTACTTCCTTGGAACCAGCTCTCAGCTTCATTTCAATGTCAATCACCTTTGGTTCCAAGCTTCTTGTTGTGA 1161 0.4462 MASSPRTVEEIFKDYSARRAGVVRALTQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMHRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPLKDKPTVDTGSKSRGSTKRSNDGQVKSNPKFANEGYEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCMRRDDDCKFKTLQLKEALHVQMEVQKRLSDQLEVQRSLKLKMEAQGKYLERLGQSYQNQTISRKPAAGNKLHMNTSPTTSMPCLSEESDDSNVNVTHKKQRVVINGDTIRVNFPTSSSSSSSPAPEFCNQNWDLLPWNQLSASFQCQSPLVPSFLL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1147 386 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Lele40g1147 386 Pfam MYB-CC type transfactor, LHEQLE motif 243 282 IPR025756 -
Lele40g1147 386 CDD PHD_AL_plant 183 233 IPR044104 -
Lele40g1147 386 FunFam PHD finger alfin-like protein 176 232 - -
Lele40g1147 386 SUPERFAMILY FYVE/PHD zinc finger 172 240 IPR011011 -
Lele40g1147 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 231 IPR013083 -
Lele40g1147 386 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Lele40g1147 386 MobiDBLite consensus disorder prediction 296 320 - -
Lele40g1147 386 MobiDBLite consensus disorder prediction 146 164 - -
Lele40g1147 386 MobiDBLite consensus disorder prediction 296 322 - -
Lele40g1147 386 SMART PHD_3 183 231 IPR001965 -
Lele40g1147 386 Pfam PHD-finger 184 232 IPR019787 -
Lele40g1147 386 PANTHER CPG BINDING PROTEIN 4 232 IPR045104 GO:0006355|GO:0042393
Lele40g1147 386 MobiDBLite consensus disorder prediction 138 174 - -
Lele40g1147 386 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1147 Lele-ChrLele40 21528300 21535580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1147 2 230 Alfin-like Transcription Factor Family AT5G05610 79.130 4.41e-120 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele40g1147 Alfin 4.2e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0039 42 276644 293293 Lele40g1147 40 21528300 21535580 CCT
Lele43g1321 43 21308493 21325354 Lele40g1147 40 21528300 21535580 CCT
Lele44g1313 44 21360687 21380157 Lele40g1147 40 21528300 21535580 CCT
Lele37g1313 37 22194043 22197901 Lele40g1147 40 21528300 21535580 hybridization