Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1146 ATGGGCGTCGATTACTACAAGATTCTTCAGGTAGACCGAAGCGCCAACGACGATGATCTCAAGAAAGCCTATCGAAAGCTTGCCATGAAGTGGCATCCTGATAAAAACCTTAACAACAAGAAAGAGGCTGAAGCTATATTCAAGCAAATATCCGAAGCTTATGATGTTTTGAGTGATCCACAAAAGCGAGCGTTGTATGATCAGTTTGGTGAGGAGGGGTTGGATGGGGAGGAATCGCCACCCGGCGCTGGTGGGTTTAACGGTGGACCAACGACGTTTCGGTTCAACCCGAGAAATGCGGAGGATATATTTTCGGAGTTATTTGGGTTTTCCCACCCGTCTGGTGGTGCTGGCGAGTCCAATTTTCAACGGGGTGTGTTTAGCGATGATGTTTTTGCTTCCTTTGGGAATGGAGGTGGACATGGCTCAGAGAACATGCCAAGGAAAGCTGCAGCTATAAAGCGAACACTGCAATGTAGTTTGGAGAATCTGTATAAAGGAACTACAAAGAAACTGAGGATTTCAAGAGACGTTCTAGATGCCGCTGGGCTTCACAGTGAAAAGGCAAGATTGGCTATGGAACTAGAGTCCATGAAATTACTTCTGATTATGATTAACGAAACTACTCTGTTCTTGTGCAGGAAGCCAACCTCAGTAGAGGAAATTCTTACATTTGAGATCGAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCAGAGAAGGGAAATGAACAGAGAGGTGTGATACCTGCAGACCTGGTCTTAATCATTAATGAGAAACCTCATAGTGTTTTCAAGAGGGACAACAATGATCTTATTGTCACCCAGAGGATATCTCTGGTCGAGGCCCTGACAAGTTATGTGGCACAGCTGACTACTCTTGATGGCCGGAATCTTACTATTCCTATCAACTCAATCATTAGTTGCTCATATGAAGAAGTTGTTGAAGGAGAGGGCATGCCTATTCTCAAAGAACCCTCCAGAAAGGGTAACTTGAGAATCAAGTTCGATATCAAGTTCCCTTCCGTACTTACATCAGAGCAGAAAATTGCCTTTAAGAAACTATTGACATCACCATCCCCATGA 1089 0.4408 MGVDYYKILQVDRSANDDDLKKAYRKLAMKWHPDKNLNNKKEAEAIFKQISEAYDVLSDPQKRALYDQFGEEGLDGEESPPGAGGFNGGPTTFRFNPRNAEDIFSELFGFSHPSGGAGESNFQRGVFSDDVFASFGNGGGHGSENMPRKAAAIKRTLQCSLENLYKGTTKKLRISRDVLDAAGLHSEKARLAMELESMKLLLIMINETTLFLCRKPTSVEEILTFEIEPGWKKGTKITFPEKGNEQRGVIPADLVLIINEKPHSVFKRDNNDLIVTQRISLVEALTSYVAQLTTLDGRNLTIPINSIISCSYEEVVEGEGMPILKEPSRKGNLRIKFDIKFPSVLTSEQKIAFKKLLTSPSP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1146 362 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lele40g1146 362 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lele40g1146 362 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lele40g1146 362 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lele40g1146 362 Gene3D DnaJ domain 3 121 IPR036869 -
Lele40g1146 362 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 357 - -
Lele40g1146 362 FunFam DnaJ subfamily B member 13 263 343 - -
Lele40g1146 362 Pfam DnaJ domain 4 67 IPR001623 -
Lele40g1146 362 FunFam DnaJ subfamily B member 13 3 118 - -
Lele40g1146 362 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lele40g1146 362 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 350 IPR008971 GO:0006457|GO:0051082
Lele40g1146 362 SUPERFAMILY HSP40/DnaJ peptide-binding domain 147 274 IPR008971 GO:0006457|GO:0051082
Lele40g1146 362 Pfam DnaJ C terminal domain 154 342 IPR002939 -
Lele40g1146 362 Gene3D - 263 343 - -
Lele40g1146 362 Gene3D - 142 262 - -
Lele40g1146 362 SMART dnaj_3 3 62 IPR001623 -
Lele40g1146 362 MobiDBLite consensus disorder prediction 71 92 - -
Lele40g1146 362 CDD DnaJ 4 59 IPR001623 -
Lele40g1146 362 CDD DnaJ_C 153 345 - -
Lele40g1146 362 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lele40g1146 362 SUPERFAMILY Chaperone J-domain 3 91 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1146 Lele-ChrLele40 21524374 21526491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1146 5 67 C2H2 Transcription Factor Family AT1G74250 38.806 7.75e-10 58.5