Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele40g1144 | ATGGCCGACTCACATTCCGCCGCATTTCAACCTCCTGTTGCTTCATCTTCCACTTCTTCTACCGCCATTCGGGATCCTTCTGCATCTACTTCGTCAACTTCAGGATCTTCACGAGTACGCCGCCAATGGGAAAATCGAAGTCGTCATCATCGATCTCAAACCCCTGGTCAAGAGCAGCAGCAGAATGTGAGTGTCATCGATTGGACATATCAAAATGCGTCTTCAATGTCTATGGATGATTCTTGGTCCTGCATCGTTGTTCTTTTCACCTTTTGGTTCTTTGTATCGATGACTATGATACTTGGAGTTTACGGTTCAATGAATCTTCTGCTTAGTCCAAGTGCTTCCATTCTTCTCCAACCAAGCCCCATATTCGTGCAATATATAAAGGTAGAAAACTTAGGGTCAAAGCCAGGAGTCATGCTCTATGGTACATATGGAACCCCTGCTCTTGATGTTTTTACTGTTTGGTCAGAAACTCGTAATGTAACCGTTCCATCTGATGTGCATAAGGAATGGAAATATTACCTGAATGAAGGGTCTCAAGTAAATATTTCATATCGCATGAGCTCTGAGAGCCCTTCTATTGTTCTTGTAATTGCGGAAGGGAATGAAGGTCTCTCTCAGTGGCTGGAGGATCCATCATATCCTAATAGCACACTCTCATGGAACATAATCCATGGAACTGGTATGATTACACATGACATATCCAGTTCATCGAACTATTATTTGGCCCTAGGAAATTTGGATGAGGAGGAGGCAGCGGAGGTGGAACTGATCATCAGAGTAAGGTCTGCCATCTACAATACTACAGACGCTTACTACAAATGTACTTTGACTAGTGACCCGTGCGGTTTGTATGTTTTCTTTCCTGATGGGAATGCAGCTGTCTTAACATCTCCGGCACCACAACAGAACACATCCAGTAATCAGTGGTATATCAAATTGTCCTATGGGCCAAGATGGGTCACATATATTTTTGGCATGGGGGGATTGACTTTGCTGATGTTTTTGGCCTTCAACTACTTTAACAAGCTGCACTATTCTCAAGAAGACAGCGCAGGAGTTCAATACGAGGGAACAGCACCTCAAAGAGTCCCTTTGCTTTCTCACAAAGATGATGATGTTTCCAGCTGGGGTTCATCATATGAATCCATGTCACAAGATGAGGAGGATCTTGACCTTCTTATAGGGGATTCCATTAATGGGAAATCTTTAGCTGATGGTGAAACCAGTAATAATACAAGGCGCCTTTGTGGAATATGCTTTGATGCTCCAAGGGATTGCTTCTTCCTTCCTTGTGGACACTGCGTGGCTTGTTTTGAATGTGCAACAAGGTTAGCAGAGGCAGAGGGTACTTGCCCCGTATGCCGTAAGAACATGAAGAAGGTGAGGAAGATATTTACTGTCTAA | 1413 | 0.4367 | MADSHSAAFQPPVASSSTSSTAIRDPSASTSSTSGSSRVRRQWENRSRHHRSQTPGQEQQQNVSVIDWTYQNASSMSMDDSWSCIVVLFTFWFFVSMTMILGVYGSMNLLLSPSASILLQPSPIFVQYIKVENLGSKPGVMLYGTYGTPALDVFTVWSETRNVTVPSDVHKEWKYYLNEGSQVNISYRMSSESPSIVLVIAEGNEGLSQWLEDPSYPNSTLSWNIIHGTGMITHDISSSSNYYLALGNLDEEEAAEVELIIRVRSAIYNTTDAYYKCTLTSDPCGLYVFFPDGNAAVLTSPAPQQNTSSNQWYIKLSYGPRWVTYIFGMGGLTLLMFLAFNYFNKLHYSQEDSAGVQYEGTAPQRVPLLSHKDDDVSSWGSSYESMSQDEEDLDLLIGDSINGKSLADGETSNNTRRLCGICFDAPRDCFFLPCGHCVACFECATRLAEAEGTCPVCRKNMKKVRKIFTV | 470 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele40g1144 | 470 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Lele40g1144 | 470 | PANTHER | OS05G0521000 PROTEIN | 51 | 470 | - | - | |
| Lele40g1144 | 470 | Pfam | Domain of unknown function (DUF4792) | 140 | 207 | IPR032008 | - | |
| Lele40g1144 | 470 | SUPERFAMILY | RING/U-box | 418 | 464 | - | - | |
| Lele40g1144 | 470 | FunFam | E3 ubiquitin-protein ligase APD2 | 408 | 469 | - | - | |
| Lele40g1144 | 470 | SMART | ring_2 | 419 | 457 | IPR001841 | - | |
| Lele40g1144 | 470 | MobiDBLite | consensus disorder prediction | 9 | 40 | - | - | |
| Lele40g1144 | 470 | Pfam | Zinc finger, C3HC4 type (RING finger) | 416 | 464 | - | - | |
| Lele40g1144 | 470 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 403 | 470 | IPR013083 | - | |
| Lele40g1144 | 470 | ProSiteProfiles | Zinc finger RING-type profile. | 419 | 458 | IPR001841 | - | |
| Lele40g1144 | 470 | Pfam | Domain of unknown function (DUF4793) | 231 | 338 | IPR032010 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele40g1144 | Lele-ChrLele40 | 21511578 | 21515755 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele40g1144 | 392 | 467 | C3H Transcription Factor Family | AT3G06140 | 30.263 | 3.20e-06 | 47.4 |