Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1142 ATGGCGTCTTACCAAGAAGCATTGCTCATGGAGAACGGACACCTCAAGGAACCGACCGGCAAGGAGATCTTGAGGCACGGCCGTTCGGCTCGCAAAATGTCCTCTTCCTCCTTGCGTAAGAAATCTGACCTCAGGCTTGTTTCCAAGGTTCGCTGCTCCTTGCTCCGAATTTTGTTGGCAAATCTGCAAGAGGTCATTCTCGGTACTAAGCTTTCCATCCTTTTCCCTGCGATTCCTCTCGCCATTGCTGCCGATTGCTATGGATTCGATCGACCCTGGATTTTTGCGTTGAGCTTACTAGGACTTACACCGCTTGCTGAACGAATCAGCTTCCTGACAGAACAAGTTGCTTATTACACAGGCCCCACAGTGGGAGGGCTTCTGAACGCGACATGTGGAAATGCGACAGAGCTCATAATAGCAATATTTGCTCTCAGCAACAATAAAATAGCTGTGGTCAAGTATTCTCTCTTAGGTTCCATCCTTTCAAACCTTCTCTTAGTCCTTGGAACCTCTCTTTTCTGTGGGGGCATAGCAAACCTTTCACCACAGCCACAAAAATATGACAGAAGACAAGCAGACGTGAACTCACTCATGCTTCTGCTTGCATTATTGTGCCACTTGCTTCCAATGCTATTCAGATATACTACTGGCTCAACTGCTCTCGCTGCAGACCCATCTCTCCAATTATCAAGAGCTGCAAGTATTGTCATGTTGATTGCATATTTTGCTTACCTTGTCTTTCAACTCTGGACACATCGCCAATTATTTGAAGCCCAGGATGAAGACGAAAATAATGACAGCGTTTCAGAAGAAGCGCCAGTGATAGGATTTTGGAGTGGCTTTGCCTGGCTGGTAGGGATGACAGTGTTCATAGCATTGTTGTCTGAGTATGTGGTGGAGACAATAGAGGATGCATCAGATTCGTGGGGTCTGTCTGTCAGCTTCCTCAGCATAATTTTACTACCAATAGTAGGAAATGCAGCTGAACATGCAGGAGCAATCATTTTTGCTTTTAAGAACAATCTGGACATCTCTTTGGGTGTTGCTTTGGGTTCTGCAACTCAAATTAGCTTGTTTGTGGTTCCCCTCTGTGTGATTGTTTCTTGGATAATGGGCCACAAAATGGATCTTGACTTCAACCCCATTGAAACGGGTTCACTTGCTTTGGCCATAATAGTCACTGCCTTCACTTTACAGGATGGAACGTCTCATTACATGAAAGGTTTCATTCTCCTGCTCTGCTACGTTGTTATTGGGGCATGCTTTTTTATGCAGAGATCACCATCCAACCAAGCTCATCTCGGCAACATGTTGCCTAAATCAGCAACCGATGCAGTTCTCAAAGCTTAA 1353 0.4545 MASYQEALLMENGHLKEPTGKEILRHGRSARKMSSSSLRKKSDLRLVSKVRCSLLRILLANLQEVILGTKLSILFPAIPLAIAADCYGFDRPWIFALSLLGLTPLAERISFLTEQVAYYTGPTVGGLLNATCGNATELIIAIFALSNNKIAVVKYSLLGSILSNLLLVLGTSLFCGGIANLSPQPQKYDRRQADVNSLMLLLALLCHLLPMLFRYTTGSTALAADPSLQLSRAASIVMLIAYFAYLVFQLWTHRQLFEAQDEDENNDSVSEEAPVIGFWSGFAWLVGMTVFIALLSEYVVETIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNNLDISLGVALGSATQISLFVVPLCVIVSWIMGHKMDLDFNPIETGSLALAIIVTAFTLQDGTSHYMKGFILLLCYVVIGACFFMQRSPSNQAHLGNMLPKSATDAVLKA 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1142 450 Pfam Sodium/calcium exchanger protein 93 251 IPR004837 GO:0016020|GO:0055085
Lele40g1142 450 Pfam Sodium/calcium exchanger protein 281 419 IPR004837 GO:0016020|GO:0055085
Lele40g1142 450 TIGRFAM caca2: calcium/proton exchanger 58 424 - -
Lele40g1142 450 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 25 429 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lele40g1142 450 Gene3D - 270 425 IPR044880 -
Lele40g1142 450 Gene3D - 122 269 IPR044880 -
Lele40g1142 450 TIGRFAM cax: calcium/proton exchanger 76 424 IPR004798 GO:0006816|GO:0015369
Lele40g1142 450 FunFam Vacuolar cation/proton exchanger 122 267 - -
Lele40g1142 450 FunFam Vacuolar cation/proton exchanger 269 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1142 Lele-ChrLele40 21487066 21490783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1142 11 432 Antiporters AT2G38170 70.561 0.0 578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1306 37 22137349 22140832 Lele40g1142 40 21487066 21490783 hybridization
Lele38g1200 38 22988491 22992381 Lele40g1142 40 21487066 21490783 hybridization