Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1135 ATGAAGAGTGGCAAAGGGAAGGGAGCAGTAAAGAACTCTAAGGAATCACTGAAGCCTGTAGATGACAGAAGGGTTGGAAAGCGAAAGGCTGTGGCTAAACCCGACAAAAGTAGTAAACGGCAGGCCAAGGCCAAGAAAGATCCCAACAAACCAAAACGACCACCCAGTGCTTTCTTTGTCTTCCTTGAGGAGTTCAGAGCAACCTTTAAGAAAGAAAATCCTAATGTGAAGGCAGTATCAGCTGTTGGGAAAGCTGGAGGAGCGAAATGGAAATCCATGTCTGAGGCTGAGAAAGCTCCATACGAAGCCAGGGCTGCAAAAAGGAAAGCTGAGTATGAAAAACTTATGAATGCTTATAATAAAAAGCAGGCAAGCACGGCAGATGATGGAGGTGATGAATCAGACAGGTCCAAATCTGAAATTAATGATGAAGATGAAGAGGAGGCACACCAAGAGGAGGAGGAGGAGGAGGATGAAGAAGACGACGAAGAAGACGAGGATGATGACTGA 510 0.4569 MKSGKGKGAVKNSKESLKPVDDRRVGKRKAVAKPDKSSKRQAKAKKDPNKPKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAGGAKWKSMSEAEKAPYEARAAKRKAEYEKLMNAYNKKQASTADDGGDESDRSKSEINDEDEEEAHQEEEEEEDEEDDEEDEDDD 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1135 169 MobiDBLite consensus disorder prediction 139 169 - -
Lele40g1135 169 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 51 120 IPR009071 -
Lele40g1135 169 MobiDBLite consensus disorder prediction 1 55 - -
Lele40g1135 169 SMART hmgende2 50 121 IPR009071 -
Lele40g1135 169 Pfam HMG (high mobility group) box 51 120 IPR009071 -
Lele40g1135 169 SUPERFAMILY HMG-box 37 121 IPR036910 -
Lele40g1135 169 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 154 IPR031061 -
Lele40g1135 169 Coils Coil 141 166 - -
Lele40g1135 169 MobiDBLite consensus disorder prediction 95 116 - -
Lele40g1135 169 MobiDBLite consensus disorder prediction 8 52 - -
Lele40g1135 169 CDD HMGB-UBF_HMG-box 51 116 - -
Lele40g1135 169 MobiDBLite consensus disorder prediction 82 169 - -
Lele40g1135 169 Gene3D High mobility group box domain 34 136 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1135 Lele-ChrLele40 21459465 21460977 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele40g1135 HMG_box 3.4e-24 CL0114