Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1130 ATGATTGGGAATTGCTTCGGGGCCTTGAATTGGTGTAAACCTAAACGGAGGAATTATACTGATGATCAATCGCGCGAACAAGTGATATCAACCAAAAAGTTTAGTTATAATTCTTTGAGGTCAGCAACAGGAGACTTTCATCCATCCAAGAGAATTGGTAGAGGAGGTTATGGAGTTGTTTACAAGGGAGTTTTACGAGATGGAACTCAAGTTGCTATCAAGTCACTTTCTGTAGAGTCTAAACAAGGAGCAAGAGAGTTCATGACAGAAATTGATATGATATCAAATATAAGACATCCAAACCTTGTACAACTAGTTGGCTGTTGTGTAGAGGACAACCATCGCATATTGGTCTACGAATTTCTGGAAAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCCAAAAGTAAACATGTTGCTCTAGATTGGCCAAAAAGGGCTTCAATTTGCCGTCGTACCGCTTCTGCTCTCGCGTTTCTTCATGATGAGGTTCAGCCAAATATTGTTCATAGAGATATTAAGGCCAGCAACATACTACTTGATGGAAACTTCAATCCCAAAATAGGCGACTTTGGCCTCGCGAAACTTTTTCCTGACAATGTCACCCATCTGAGTACTCGTGTGGCTGGCACTGTGGGATATCTTGCACCAGAATATGCACTTCTAGGACAGCTTACGAAAAAGGCCGATGTGTACAGTTTTGGCATTCTCATGCTCGAAGTAATCAGCGGTAGAAGTAGCAGCAAAGCTGCATTTGGAGATAAGCTACTGGTTCTTGTGGAATGGATATGGAAGCTGAAAGAAGAAAACAGGCTTCTGGCCATTGTTGATCCAGAACTAACTTCATATGACGAGGTTGAGGTCATGCGTTTCATTAAGGTTGCTCTGTTCTGTACTCAATCAGCTGTTCATCATAGACCGACCATGAAGCAAGTAGTAGAGATGCTCTTCAAGGAAGTTCACCTCAATGACAAGGCTTTGACGGAGCCTGGAGTTTATACGTGGCATCGTGCCTCCAAAAATGCTGTAAATTTTTCAGACGAGGCATCGACTTCTCAAGCAAACAAGTCTAAACGACCTGAAAATTCATACATGGCTTCAAACCAGTTTGCTGATTCTGATATTATGACAGAGATGCTTCCGAGATGA 1149 0.4212 MIGNCFGALNWCKPKRRNYTDDQSREQVISTKKFSYNSLRSATGDFHPSKRIGRGGYGVVYKGVLRDGTQVAIKSLSVESKQGAREFMTEIDMISNIRHPNLVQLVGCCVEDNHRILVYEFLENNSLASSLLGSKSKHVALDWPKRASICRRTASALAFLHDEVQPNIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDNVTHLSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEVISGRSSSKAAFGDKLLVLVEWIWKLKEENRLLAIVDPELTSYDEVEVMRFIKVALFCTQSAVHHRPTMKQVVEMLFKEVHLNDKALTEPGVYTWHRASKNAVNFSDEASTSQANKSKRPENSYMASNQFADSDIMTEMLPR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1130 382 FunFam Putative LRR receptor-like serine/threonine-protein kinase 122 328 - -
Lele40g1130 382 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 354 - -
Lele40g1130 382 FunFam cold-responsive protein kinase 1 16 121 - -
Lele40g1130 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Lele40g1130 382 SMART serkin_6 46 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele40g1130 382 CDD STKc_IRAK 52 316 - -
Lele40g1130 382 MobiDBLite consensus disorder prediction 346 367 - -
Lele40g1130 382 SUPERFAMILY Protein kinase-like (PK-like) 23 317 IPR011009 -
Lele40g1130 382 Pfam Protein kinase domain 47 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele40g1130 382 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Lele40g1130 382 Gene3D Phosphorylase Kinase; domain 1 10 121 - -
Lele40g1130 382 ProSiteProfiles Protein kinase domain profile. 46 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele40g1130 382 Gene3D Transferase(Phosphotransferase) domain 1 122 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1130 Lele-ChrLele40 21416629 21419904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1130 13 355 Receptor kinase-like Gene Family AT1G56120 48.415 9.17e-106 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele40g1130 Pkinase 1.3e-46 CL0016