Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1109 ATGCCTTCTTCTTCTACCACCATTATCTCCAAATGCACTATCTACCCAGACCAGAAATCCTCTCTTAAGACTCTCAAGCTTTCTGTCTCTGACCTTCCTATGCTCTCTTGCCATTACATTCAGAAGGGTGTTCTGCTTCCCCTCCCTCCTTACTCCTTCGATGATCTCATCGTCTTCCTCAAACACTCGCTCTCTCTTACTCTTTCCCATTTCCCCGCCCTAGCCGGCCGCCTCATCACTGATGATCTCGGCTATGTTCACATACTCTGCAATGATGCCGGCGTGGATTTTGTTCAGGCCAGGGCTAAACACCTCCTTATCGACGCAATTTACTCCCCTGAACTTGTGGATGTGCCCAATTGCTTTAAAGAGTTTTTTGTCTACGACAACACCATATCTTATTCCGGCCACTACAACCCGCTTGCCGCCGTCCAGGTCACCGAGCTCGCCGATGGGGTGTTCATAGGATGCACCGTGAATCACTCCGTCACCGACGGGACTTCCTTCTGGCACTTCTTCAATACGTTCGCTGAGATCTGTAAGGGCGTGAAGAAGATATCGAAGTCGCCGGATTTCACCCGCGACACCGTTTTCAACTCTGCCGCCGTGCTGAGAGTACCCGAAGGCGGCCCGAAGCTGACCTTCGACGCCAACCAGCCTCTACAGGAGAGAGTTTTCCACTTCAGCAGGGAGGCAATTCAGAAGCTGAAGCTCAGAGCCAACAATGGCCACCGTAACGGCTTCGGGGATTCCGCGGAGGTAATGGGGAAGCAGGTTAACGACAGTTGGAAAACAGTTAACGGCGTTACTAACGGGCAGATAACATCGGTTAGCAACGACGTACCAGATAGGACCGGAGAGATCTCATCTTTCCAATCCTTATCTGCTCAGCTGTGGCGTTCCGTCACACGTGCGAGGAAGCTGGCCCCATCCAAAACGTCGACGTTCCGTATGGCGGTGAACTGTCGCCACCGTCTGAGGCCCAAGATGGATGCTTACTACTTCGGCAACGCGATTCAGAGCATCCCGACCGTCGCTCAAGTCGGCGAGATCCTGTCTCGCGATCTGGGATGGTGCGCGAATCTTCTCCATGAAAACGTCGTCGCCCACGACGATGATGTGGTGCGCCGCGGCATACAGGATTGGGAGAACGCTCCAAGGCTGTTTCCGCTGGGGAACTTCGACGGCGCAATGATCACGATGGGCAGCTCTCCGCGTTTTCCGATGTACGACAATGATTTCGGATGGGGCCGACCGCTGGCGGTGAGAAGTGGGAAGGCGAACAAATTTGACGGGAAGATCTCGGCGTTTCCGGGAAGAGAAGGGAACGGAAGTGTTGATCTGGAAGTGGTTTTGGCGCCGGAGACCATGGAGGGGCTGGAAAACGACACGGAGTTTATGCAGTACGTATCGCCGATCGTGTGA 1425 0.5389 MPSSSTTIISKCTIYPDQKSSLKTLKLSVSDLPMLSCHYIQKGVLLPLPPYSFDDLIVFLKHSLSLTLSHFPALAGRLITDDLGYVHILCNDAGVDFVQARAKHLLIDAIYSPELVDVPNCFKEFFVYDNTISYSGHYNPLAAVQVTELADGVFIGCTVNHSVTDGTSFWHFFNTFAEICKGVKKISKSPDFTRDTVFNSAAVLRVPEGGPKLTFDANQPLQERVFHFSREAIQKLKLRANNGHRNGFGDSAEVMGKQVNDSWKTVNGVTNGQITSVSNDVPDRTGEISSFQSLSAQLWRSVTRARKLAPSKTSTFRMAVNCRHRLRPKMDAYYFGNAIQSIPTVAQVGEILSRDLGWCANLLHENVVAHDDDVVRRGIQDWENAPRLFPLGNFDGAMITMGSSPRFPMYDNDFGWGRPLAVRSGKANKFDGKISAFPGREGNGSVDLEVVLAPETMEGLENDTEFMQYVSPIV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1109 474 Pfam Transferase family 6 467 - -
Lele40g1109 474 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 468 - -
Lele40g1109 474 Gene3D - 219 467 IPR023213 -
Lele40g1109 474 Gene3D - 6 206 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1109 Lele-ChrLele40 21255995 21257419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1109 60 462 Monolignol Biosynthesis Gene Families AT5G48930 27.139 2.82e-36 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1271 37 21927531 21928934 Lele40g1109 40 21255995 21257419 hybridization
Lele38g1166 38 22772963 22775718 Lele40g1109 40 21255995 21257419 hybridization