Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1103 ATGATTGTCTCGATGGACTTGAATGCCTCACCGGTGCCCGAGGAAGATGAGGATATTTTTGAGAGACATATAGAACAGTATATCCAACCAGAAGAACGCATAGAAACTGCAGTGGATATAGCACGTCGGGAGCGTGAAGAAAGGAAAAGACGGTTGAAAAGAGAACGGACAGATGATAGACCTGCCCATGTATCACAGTCAACAACTGGTTATGATCAGACCTTTAATGCCAAGTCTCTTAAGTCATATGATAAAAGTAGGCTTCCTCCAGGGTGGTTGGATTGCCCTTCATTTGGTCAGGAAATATATTGTTTGATACCTTCCAAGGTTCCACTTGGTGAATCATTCAATGATTGTATTGCTCCTGGTCGAAGATACTCATTTAAACAAGTGATACATCAACAAAGAGTTCTAGGGAGAAAACTTGGTTTGGTGATTGATCTGACAAATACTACTCGTTACTATCCAGTTTCAGATCTGAAGAAAGAGGGTATCAAGCATATTAAGATTCAATGCAAGGGACGTGATTCTGTACCTGATAATTTGTCTGTGAATCAATTTGTCCACGAGGTTACTCAATTTCTATCACGTCAAAAACAAGCGAAGAAATATATACTTGTCCATTGTACACATGGCCATAATCGTACTGGGTACATGATTGTCCATTATCTTATGCGCTCTATGTCTATGTCTGTCACCCAGGCAATAAAAATATTTTCTGAAGCACGCCCCCCAGGAATTTATAAACATGATTATATTGATGCTTTGTACACCTTTTATCACGAAAAAAAGCCTGAAATGGTAGTTTGTCCTCCTACACCAGAGTGGAAGAGATCCTCTGAATTTGATCTCAATGGTGAAGCAATGCCAGATGATGATGATGATGGAGTGCCAGACCCTCCTCATGAGAACCATGAGACAGATGCAATAATGACAAATGATGATGTTTTGGGAGATGAAATACCAGTTGATCAACAAGATGGATTTCGACAGTTCTGTTATCAGTCTCTTAAATTGAATTTTGGGGGTAGAGGACACACACATTTTCCAGGTTCACACCCAGTTTCTCTTAATAGGGAAAATTTACAATTATTACGACAGCGTTATTATTATGCAACATGGAAAGCTGACGGAACAAGATATATGATGCTAATAACTATGGATGGATGTTACTTGATTGATAGAAGTTTCAATTTCCGAAGGTTGCAAATGAGGTTTCCTTGCAGAGGCTCAAACGATGGTTTGGCTGAGAAGACCCACCACTACACATTGCTTGATGGGGAGATGATCATTGATACGTTGCCTGATTCACAGAAACAGGAGAGGAGATACCTCATATATGATATGATAGCTATTAACCATGTATCAGTAATAGAGCGACCGTTCTATGAACGGTGGAAGATGCTTGAGAAAGAGGTGATTGAACCTAGAAATCAGGAACGGCATAATACATACCAGAGCAGAAATCCTTGTTATAGATATGACCTGGAACCATTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCTACCGTCAATAAGCTTTTAAATGAATTCATTAAGAAACTCTCACATGATGCGGATGGCCTCATATTTCAGGGTTGGGATGATCCTTATATACCCCGCACTCATCAAGGCCTCCTGAAGTGGAAATATCCTGAGATGAATTCAGTCGATTTTCTCTTTGAGATTGATGATGATCGCCAGTGTCTTTTCCTTCATGAACGAGGAAAGAAGAAACTCATGGAAGGGAATAGGGTTGCATTCAGAGATGGTTCAGATCCCTTGCTTTATTCGGGGAAGATTATAGAGTGTTCTTGGGATATAAATGAACAGGAATGGGTATACATGCGAACCAGGACAGATAAATCAACTCCAAATGATTTTAACACTTACAGGAAGGTTATGCGGAGTATAAAAGACAACATCACAGAGGATGTCTTGTTGAATGAAATTTATGAGATAATTCGCCTTCCGATGTATGCTGACCGGATAAAAAATGACAGCAAAGCCCACCATCATACTGGTGCAGCACGCCGGAGGTGA 2046 0.4027 MIVSMDLNASPVPEEDEDIFERHIEQYIQPEERIETAVDIARREREERKRRLKRERTDDRPAHVSQSTTGYDQTFNAKSLKSYDKSRLPPGWLDCPSFGQEIYCLIPSKVPLGESFNDCIAPGRRYSFKQVIHQQRVLGRKLGLVIDLTNTTRYYPVSDLKKEGIKHIKIQCKGRDSVPDNLSVNQFVHEVTQFLSRQKQAKKYILVHCTHGHNRTGYMIVHYLMRSMSMSVTQAIKIFSEARPPGIYKHDYIDALYTFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAMPDDDDDGVPDPPHENHETDAIMTNDDVLGDEIPVDQQDGFRQFCYQSLKLNFGGRGHTHFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRLQMRFPCRGSNDGLAEKTHHYTLLDGEMIIDTLPDSQKQERRYLIYDMIAINHVSVIERPFYERWKMLEKEVIEPRNQERHNTYQSRNPCYRYDLEPFRVRRKDFWLLSTVNKLLNEFIKKLSHDADGLIFQGWDDPYIPRTHQGLLKWKYPEMNSVDFLFEIDDDRQCLFLHERGKKKLMEGNRVAFRDGSDPLLYSGKIIECSWDINEQEWVYMRTRTDKSTPNDFNTYRKVMRSIKDNITEDVLLNEIYEIIRLPMYADRIKNDSKAHHHTGAARRR 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1103 681 ProSitePatterns Tyrosine specific protein phosphatases active site. 207 217 IPR016130 GO:0016311|GO:0016791
Lele40g1103 681 Gene3D Protein tyrosine phosphatase superfamily 62 283 IPR029021 -
Lele40g1103 681 SMART dsp_5 122 262 IPR020422 GO:0006470|GO:0008138
Lele40g1103 681 Pfam mRNA capping enzyme, C-terminal domain 556 649 IPR013846 -
Lele40g1103 681 Pfam Dual specificity phosphatase, catalytic domain 140 260 IPR000340 GO:0008138|GO:0016311
Lele40g1103 681 MobiDBLite consensus disorder prediction 45 62 - -
Lele40g1103 681 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 185 254 IPR000387 GO:0016311|GO:0016791
Lele40g1103 681 MobiDBLite consensus disorder prediction 45 71 - -
Lele40g1103 681 FunFam mRNA capping enzyme family protein 550 658 - -
Lele40g1103 681 FunFam mRNA capping enzyme family protein 84 298 - -
Lele40g1103 681 PIRSF mRNA_capping_HCE 74 681 IPR017074 GO:0004484|GO:0006370|GO:0140818
Lele40g1103 681 Gene3D - 552 643 IPR012340 -
Lele40g1103 681 PANTHER MRNA-CAPPING ENZYME 83 663 - -
Lele40g1103 681 Gene3D DNA ligase/mRNA capping enzyme 312 551 - -
Lele40g1103 681 Coils Coil 38 58 - -
Lele40g1103 681 CDD Adenylation_mRNA_capping 342 552 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lele40g1103 681 ProSiteProfiles Dual specificity protein phosphatase domain profile. 115 266 IPR020422 GO:0006470|GO:0008138
Lele40g1103 681 Pfam mRNA capping enzyme, catalytic domain 353 551 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lele40g1103 681 SUPERFAMILY Nucleic acid-binding proteins 554 667 IPR012340 -
Lele40g1103 681 ProSiteProfiles ATP-dependent DNA ligase family profile. 435 579 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele40g1103 681 MobiDBLite consensus disorder prediction 283 306 - -
Lele40g1103 681 CDD RNA_5'-triphosphatase 91 257 - -
Lele40g1103 681 FunFam mRNA capping enzyme, putative 312 549 - -
Lele40g1103 681 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 277 IPR029021 -
Lele40g1103 681 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 314 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1103 Lele-ChrLele40 21169873 21182008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1103 1 681 Protein tyrosine phosphatase (PTP) family AT3G09100 70.640 0.0 963