Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1099 ATGCTTCAGATTCGGCTTAGTAAGGTTCAAGCCCCAGAAGGTTTAGCAGGGGTGAAGCCCTCACCTGCTGAGACTGTTACAGTTACTTGTCCTGATCATCTAGTCCTTGCTGATCTTCCTGTAGCAAAGGGCATAGGTTCAGCAACTGCTACTTCACTTGTGAAGACTCTAGGTCGTCGATCTCGCCGCCAATGTGGTGACTGTGTCCACTTCTGTGTTCGTTGTGACTTCCCAATTGCAATCTATGGACGGCTGAGCCCTTGTGAGCATGCCTTCTGTCTTGATTGTGCTAGAAGTGATTCAATATGCTACCTGTGTGATGAACGAATCCAGAAAATTCAGACAATCAAAATGTTAGAAGGAATATTCATCTGTGCTGCTCCTCACTGTTTCAAGTCTTTCTTGAAGAAGTCAGAATTTGAAATGCATATCCAAGATGTACATGCCGACCTTCTCCGGTCCCATGTAGAAAAAGAAGATGGAAATGAGTCAGAGACGCTTAGTGTTCGGCAATCTGCAATTTCAGATTCTTCTGCACGAGCTCCTCAAAGGCCCGTTTTCTCGCCTGGTTCAAATTCCCAGCTACATGATCGAGAAGACAAGGCCGGTCAACAACCACCGAGAGACCAACCTCCTTCAAGGCCAGTTCTGCAGCCAAAGCCACCTGCTTTTGGTCAAGTTCAAAATCACTCTGCAGATCTCCAGCCTGGCTCTAATGGAGGTATTACCCCTGCCTTCTATGAACAAAATTCTGACATGCAGCGACCTCCACAAGAACCTTCCCAGTTTATGGATCGGCATCGAGGAGTCACACCCGAGACACTGCTCCCTGATTATCCATCCATGCATTCCTCCCAGACACCCAATTTCACAGTGCCAGTTAATGCCAACACGATGTTGAATCCTCCTGCACCATTTGGTTATCCTCCTTACCCGCCACATGATGGAGCTCCACCATTTTATGGGAACCCTTATGATTTGCATCGGCAGGACTCGGCTTCTGAAGTTGGTGGAGACCAGAGTTCCTTACTTGGTTTTCTGCCGGGTGCCGCAACTGGCCCTAATTTTCCAGCAAATTATCCCCAGCCCTTGAATGCAGGAACTGGGGGCCTACCTTTTGAACAAGGACGTGGTGGCATGGCTATGGATCCACGAGACGCTAAAGGTATATTGGCCCCACAGTCCATGTCCCTCCCACCTCCGCCTCCACCACCATTGGCGCACATGTCCCATCTGAACCAGAAATATTATTCCAGTGAGTTCGTACACAATGGGCATGGTTATGGTTGGCAGTATGATAATCGTGAAGCCTTCGGTGGTCAGGACTAG 1329 0.4868 MLQIRLSKVQAPEGLAGVKPSPAETVTVTCPDHLVLADLPVAKGIGSATATSLVKTLGRRSRRQCGDCVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDERIQKIQTIKMLEGIFICAAPHCFKSFLKKSEFEMHIQDVHADLLRSHVEKEDGNESETLSVRQSAISDSSARAPQRPVFSPGSNSQLHDREDKAGQQPPRDQPPSRPVLQPKPPAFGQVQNHSADLQPGSNGGITPAFYEQNSDMQRPPQEPSQFMDRHRGVTPETLLPDYPSMHSSQTPNFTVPVNANTMLNPPAPFGYPPYPPHDGAPPFYGNPYDLHRQDSASEVGGDQSSLLGFLPGAATGPNFPANYPQPLNAGTGGLPFEQGRGGMAMDPRDAKGILAPQSMSLPPPPPPPLAHMSHLNQKYYSSEFVHNGHGYGWQYDNREAFGGQD 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1099 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 123 IPR013083 -
Lele40g1099 442 MobiDBLite consensus disorder prediction 166 193 - -
Lele40g1099 442 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Lele40g1099 442 MobiDBLite consensus disorder prediction 224 258 - -
Lele40g1099 442 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Lele40g1099 442 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Lele40g1099 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 431 IPR040383 GO:0016567|GO:0061630
Lele40g1099 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 149 IPR013087 -
Lele40g1099 442 MobiDBLite consensus disorder prediction 157 265 - -
Lele40g1099 442 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1099 Lele-ChrLele40 21138918 21141003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1099 1 363 C2H2 Transcription Factor Family AT5G01160 50.270 6.64e-103 309