Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1078 ATGTCGAGCATACAGATGTCCCATGTAGATTTAGAGCAGGGAGGTTACCATCGTTCGGTGGTTGCAAGTGATGTCAGCGCCGACGGGAGCGTGTGCTTCTCCGATGCCGACGATGGGTCGTGCTACTCTCATTTCTACTCAACCTACGGTGGTTCATACGACGATTGCAGTTTCTCCTGCGTTTCTGATTCTGAGGTTAGATGTGTTGCTGATTCTAGGAGAGCTTCTTCTGTGACTGATTGTTCGGTGGAAGTTGAAATTGAAAGTGGGGTTCCTGAAATTAAGGTGCATTTGGCCAAAGTAGAGCGAGATTGTAGGATTTGTCACTTGGGTTTGGAGAGTGACAGCAATGATGAGTCTGGGGTTCCAATTGAATTAGGATGCTCTTGTAAGGATGATTTAGCTGCTGCTCACAAACACTGTGCTGAGGCCTGGTTCAAGATCAAAGGGAATAGGACCTGTGAAATTTGCCATTCGGTTGCCCGGAATGTTTATGGAGGGAACGAGGAGGTAACGGAGCATCCAAGTGATGGCAATAATGCGCCTACTGCAGCTGCAACAGCAGTGTCCACACCGGCACCTTCTTCAGAAACTCGAAGATTCTGGCATGGCCATAGGTTCCTGAATTTTCTGCTTGCTTGTATGGTTTTTGCTTTTGTCATATCATGGCTTTTTCACTTTAATGTACCTTCTTCATAA 699 0.4664 MSSIQMSHVDLEQGGYHRSVVASDVSADGSVCFSDADDGSCYSHFYSTYGGSYDDCSFSCVSDSEVRCVADSRRASSVTDCSVEVEIESGVPEIKVHLAKVERDCRICHLGLESDSNDESGVPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGGNEEVTEHPSDGNNAPTAAATAVSTPAPSSETRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1078 232 MobiDBLite consensus disorder prediction 173 192 - -
Lele40g1078 232 ProSiteProfiles Zinc finger RING-CH-type profile. 97 164 IPR011016 GO:0008270
Lele40g1078 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 166 IPR013083 -
Lele40g1078 232 PANTHER ZINC FINGER, RING-CH-TYPE 21 231 - -
Lele40g1078 232 CDD RING_CH-C4HC3_MARCH 105 158 - -
Lele40g1078 232 Pfam RING-variant domain 105 157 IPR011016 GO:0008270
Lele40g1078 232 SMART ringv_2 104 158 IPR011016 GO:0008270
Lele40g1078 232 MobiDBLite consensus disorder prediction 168 192 - -
Lele40g1078 232 SUPERFAMILY RING/U-box 102 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1078 Lele-ChrLele40 21017010 21019554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1078 63 232 C3H Transcription Factor Family AT5G05830 60.234 7.77e-68 206