Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1050 ATGGAGCAAGGTCAAATCCGGATGTGGACGAAGAGGAAATACTCTTTGAGTTCTTCAAATCTCATCACTTCATCAACAACAAAACCCTCTTCTACTTCTTATGATGATTCTTCATGGGAAGAGCAAGCTTTTGCTGAAGATGCTTCTGGGCCTCTTGGGGGATGCATATGGCCACCCAGATCATATACTTGCAGTTTCTGCAGAAGAGAGTTCAGATCAGCACAAGCTCTTGGAGGCCACATGAATGTTCATAGAAGAGACAGAGCCAGACTCAAGCAGCCCTCAAGCCCCCAAAACAATAATGAACTTCAAATTCCAAATACTTCTTCGTTTATGGGTTTCCTATACCCTTATGACCATAATTGTTCTACTTCCAACCCTAATTCTGTTCTTGTTGCTTCTTCCCCTTCTAATAAGGACATAATGGTTCCAGCTTATAATTCTTCATCTATTCTTCCCCCATCACAAGGACTTAAGGTGGCTTCTTCTAATTATTCTCCTCTCTATTCTTCTCCTTATAAATCCAACTGCTCAAAATTATTGGCTGAAGATGAGAAGATCACAGACGTGTTGGATTGTGTTGGGTGCGAGGACGATAATGGAAAATCTGATTTGGCTTTTGGTTTAAATTTGGTCGTCTGTAGAGGTATTGAGGCAAAGGAGGAAGCTATTATAAGTTGCAAGAAGAGGAGAACTTCTGAAACTGCATCGATTCTTCCTCTCTTCCCAAATTCAAATTCTTCAGTTGAATTTGGCCCTAGCTCCAAACAAGAGCTAGATCTCGAGCTAAGGCTGGGACAAAGCAAGCACAAGTGTGATTGGATCAGTCCTGATGAAGGCCTTAGATATATGTCTGCAGGTTATATTGTACTTGACCTTATAATCGATGGTTCCAATAATATCGATTTTTCCTAG 915 0.4098 MEQGQIRMWTKRKYSLSSSNLITSSTTKPSSTSYDDSSWEEQAFAEDASGPLGGCIWPPRSYTCSFCRREFRSAQALGGHMNVHRRDRARLKQPSSPQNNNELQIPNTSSFMGFLYPYDHNCSTSNPNSVLVASSPSNKDIMVPAYNSSSILPPSQGLKVASSNYSPLYSSPYKSNCSKLLAEDEKITDVLDCVGCEDDNGKSDLAFGLNLVVCRGIEAKEEAIISCKKRRTSETASILPLFPNSNSSVEFGPSSKQELDLELRLGQSKHKCDWISPDEGLRYMSAGYIVLDLIIDGSNNIDFS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1050 304 PANTHER OS07G0101800 PROTEIN 33 268 - -
Lele40g1050 304 Pfam C2H2-type zinc finger 62 86 - -
Lele40g1050 304 SUPERFAMILY beta-beta-alpha zinc fingers 59 88 IPR036236 -
Lele40g1050 304 MobiDBLite consensus disorder prediction 78 103 - -
Lele40g1050 304 SMART c2h2final6 62 84 IPR013087 -
Lele40g1050 304 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Lele40g1050 304 Gene3D Classic Zinc Finger 59 110 - -
Lele40g1050 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1050 Lele-ChrLele40 20757716 20758866 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1050 36 93 C2H2 Transcription Factor Family AT2G37740 81.034 4.70e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele40g1050 zf-C2H2_6 5.6e-06 CL0361