Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1049 ATGGAGTTTGGCGAGAGAATAAGGTGGGGTTATTCTTCTGAGGAAGCATCACAAGTGAGATCCTACACCTGTGCTTTCTGTCAGAGAGGGTTTTCAAACGCACAAGCTCTTGGAGGTCATATGAACATTCATAGAAGAGACAGAGCGAGGCTGAGACAACAATATTGTCAAGAGAATATTTTGCTCTCTGTTGACACTACGAACCCTAATAATAATGATCTTTGTCAAGATGAGCATCAGAACAAGCCATCAATTTTTCCAGAGGCAAAGGTAAATATTGGTATATCTTCAGAAATTTCTCATCATCAGCTTCCTATTTTTTTCGGAGCAGAAGAGAAGATGGAGTTGGACCTTGAGCTTCGGTTAGGTCCCGAGCCAGTAAAGCAGACACCACCCATTCTGAGACGATTTTTTTGA 417 0.4173 MEFGERIRWGYSSEEASQVRSYTCAFCQRGFSNAQALGGHMNIHRRDRARLRQQYCQENILLSVDTTNPNNNDLCQDEHQNKPSIFPEAKVNIGISSEISHHQLPIFFGAEEKMELDLELRLGPEPVKQTPPILRRFF 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1049 138 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 49 IPR013087 -
Lele40g1049 138 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Lele40g1049 138 PANTHER OS07G0101800 PROTEIN 19 84 - -
Lele40g1049 138 Gene3D Classic Zinc Finger 9 83 - -
Lele40g1049 138 SUPERFAMILY beta-beta-alpha zinc fingers 20 49 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1049 Lele-ChrLele40 20749919 20750335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1049 13 130 C2H2 Transcription Factor Family AT3G53820 38.406 6.07e-21 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele40g1049 None None None