Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1020 ATGCATCCTCGTGGAGTTACGCAGCACACTTCTCTGGCTTCAGCTATGAATGAACCATTTGAAGGAACGACATGGGCATGGTTAGCAGAGATTGAGGAGGAGGACAGAGTATTGAATGTACGCTTGCCTGAAAATGAAGATAAACTTGCATTGGGGAAATATGAGGACACAATCAAAGAGTGCACTAAGGCATTGGAACTCAATCCTGCATATCTGAGAGCTCTGGTGAGAAGAGGCGATGCACATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCCGATATGAAAAAGATCATAGAAATTGATCACTCAAATGATCAAGCTAGGAGAACCATTTGGAAATTGGAACCCCTGGCAGCAGAAGCGGGAGAAGATGAAGGAAGAAATGATTGGTAG 396 0.4394 MHPRGVTQHTSLASAMNEPFEGTTWAWLAEIEEEDRVLNVRLPENEDKLALGKYEDTIKECTKALELNPAYLRALVRRGDAHEKLEHFEEAIADMKKIIEIDHSNDQARRTIWKLEPLAAEAGEDEGRNDW 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1020 131 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 49 124 - -
Lele40g1020 131 Gene3D Tetratricopeptide repeat domain 48 130 IPR011990 GO:0005515
Lele40g1020 131 ProSiteProfiles TPR repeat profile. 72 105 IPR019734 GO:0005515
Lele40g1020 131 Pfam Tetratricopeptide repeat 49 108 - -
Lele40g1020 131 SUPERFAMILY TPR-like 49 112 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1020 Lele-ChrLele40 20547994 20553269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1020 48 109 Calmodulin-binding Proteins AT3G25230 40.323 9.88e-07 44.7