Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1006 ATGGCTGAGGTGGAATCGGAGGAGTGTTGCCAGGAGAATAAACAAACTATTGCTGCTTCTAGCTCCTCTATATCTGAAAGCAGTGGCAGCGCTCTACCCAAGTCTCCTGGAATATTGTGCTGCACTATTCATCTTAAAGCTGTATATTTTTTGCTTAATTTCACATTCTGCATTAGCGACTGGAGAACTACTGGCCCTATAAGGCGTGCGAAGGGTGGTTGGACAGTAGAAGAGGATGAGACACTAAGGAATGCTGTTGCAATTTTCAAGGGAAAGAATTGGAAGAAAATAGCTGAGTTTTTCCCTGATAGATCAGAAGTGCAATGTCTTCACAGATGGCAAAAAGTTCTTAACCCAGAACTTGTTAAAGGGCCTTGGACTCAGGAGGAGGATGATAAAATTGTTGAACTAGTGTCAACATATGGGCCTACAAAATGGTCGGTAATAGCCAAGTCGCTGCCTGGTCGTATAGGGAAACAATGCCGAGAGCGATGGCACAACCATCTTAATCCGGACATAAAGAAGGCTGCCTGGACTTCGGCAGAGGAATTAGCCCTCATGAATGCTCATTGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTGCCTGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCATTGAAGAAGAAGTTGGACTTTTATTTAACTACTGGACAACTTCCACCAATTTCAAAGAATAGTCCAAAAGTTGATGTCAAAGACAAAATGATATCCTCTGCAACAGAAACACTTCTTGTTAGTCCAAATAAAGTATTAGATGAAGCTGCTGAAACATTGTCAGAAACTACAGAGATTAATAAGCAAGATGACAGTGCTAAGAATCACTCAAGGCATTTCGCAACAGCAAGAGATGTTGGTGATTCTTCAAATGTTCTTGCAAATGAATCTGCTGATTCTGACTGTATCGAGTGCAAGCCCAAATCCTCCAATTTAGAGTTCAGCTGCAGCAACTCAGAACCAATGTCAAGAGACAATTTTGGAATAAATGGTGAACAAACACATGAGAAATCTGGACTCAATCGCAAGCTAGCAATCGAGCATTGTATAAATAATGGTAAAATGAGTAGTAGCAGGTTGATCACAAAACCTTTTCCACAGGAAGGTTCAACTTGTGGTTCTTTATGTTATAAGCCACTGCAGATGGAGAATTTGGTTCCTTTAGATTCTCTTTATTTAAATATCTTTTATCTCCAAAATGACTACAGCCCTACACCCATGGTGTCTCCTGCTGGTTTCTTCACTCCACCTTGTGTGAAGGGTCGTGAATTTTTCAAACAAACTCCTGAATCAATATTGAAAATGGCTGCTGAGACTTACCCAAATACCCCTGCCATATTGAGGAAGAGAAGGGCTGGAGTCCAGACACAAGTCACTCCCAGTAAAGTAGTGAAAGTTGATGGAGAATCTCATGCTTCTATTGGTCAGCAGAGAAATAAGAATTATACTGATTCTGAGGTTGAGAGGTTCTCTGAGAGTCCAGCAAGCCATGCCCATGGCAATGACCTTCCCAATAATAAGATTTTCAATGCATCTCCACCCTACCGTTTAAGATCCAAACGGACAACAGTTGTCAAGTCTGTGGAGAAACAACTTGCGCTTGTATTTGACCAAGAAAAGCACAACAGCATCAAGAGGAAAATGGAATAG 1686 0.4128 MAEVESEECCQENKQTIAASSSSISESSGSALPKSPGILCCTIHLKAVYFLLNFTFCISDWRTTGPIRRAKGGWTVEEDETLRNAVAIFKGKNWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSTYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKAAWTSAEELALMNAHCIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLTTGQLPPISKNSPKVDVKDKMISSATETLLVSPNKVLDEAAETLSETTEINKQDDSAKNHSRHFATARDVGDSSNVLANESADSDCIECKPKSSNLEFSCSNSEPMSRDNFGINGEQTHEKSGLNRKLAIEHCINNGKMSSSRLITKPFPQEGSTCGSLCYKPLQMENLVPLDSLYLNIFYLQNDYSPTPMVSPAGFFTPPCVKGREFFKQTPESILKMAAETYPNTPAILRKRRAGVQTQVTPSKVVKVDGESHASIGQQRNKNYTDSEVERFSESPASHAHGNDLPNNKIFNASPPYRLRSKRTTVVKSVEKQLALVFDQEKHNSIKRKME 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1006 561 CDD SANT 177 220 IPR001005 -
Lele40g1006 561 ProSiteProfiles Myb-like domain profile. 118 169 IPR001005 -
Lele40g1006 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 174 224 IPR017930 -
Lele40g1006 561 SUPERFAMILY Homeodomain-like 120 216 IPR009057 -
Lele40g1006 561 MobiDBLite consensus disorder prediction 274 295 - -
Lele40g1006 561 Gene3D - 70 122 - -
Lele40g1006 561 ProSiteProfiles Myb-like domain profile. 170 220 IPR001005 -
Lele40g1006 561 CDD SANT 125 169 IPR001005 -
Lele40g1006 561 FunFam Transcriptional activator Myb isoform A 123 174 - -
Lele40g1006 561 FunFam Transcriptional activator Myb isoform A 70 122 - -
Lele40g1006 561 Gene3D - 123 174 - -
Lele40g1006 561 PANTHER MYB PROTEIN-RELATED 71 143 - -
Lele40g1006 561 Pfam Myb-like DNA-binding domain 177 218 IPR001005 -
Lele40g1006 561 Pfam Myb-like DNA-binding domain 71 117 IPR001005 -
Lele40g1006 561 Pfam Myb-like DNA-binding domain 123 169 IPR001005 -
Lele40g1006 561 MobiDBLite consensus disorder prediction 276 295 - -
Lele40g1006 561 SMART sant 174 222 IPR001005 -
Lele40g1006 561 SMART sant 70 119 IPR001005 -
Lele40g1006 561 SMART sant 122 171 IPR001005 -
Lele40g1006 561 FunFam Transcription factor MYB3R-2 176 244 - -
Lele40g1006 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 117 IPR017930 -
Lele40g1006 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 173 IPR017930 -
Lele40g1006 561 CDD SANT 74 117 IPR001005 -
Lele40g1006 561 ProSiteProfiles Myb-like domain profile. 66 117 IPR001005 -
Lele40g1006 561 MobiDBLite consensus disorder prediction 478 525 - -
Lele40g1006 561 Gene3D - 176 249 - -
Lele40g1006 561 SUPERFAMILY Homeodomain-like 72 127 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1006 Lele-ChrLele40 20454839 20458498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1006 62 553 MYB Transcription Factor Family AT5G02320 48.249 6.90e-130 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele40g1006 Myb_DNA-binding 6.2e-14 CL0123