Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0982 ATGAATGGTCCGGTGAAACCGCAAGTGAAATTGGGAGATTTCTTTGAAGAAGAAGAAGGAACGGTTATAGCAGCGGTTAAAGAGCGAGAGATCTGGCTTCAGAATAATAATGGCGGCCATGGCCACCAAGATGATGAAGATGATCTTCTTGCTGGTGTAATGGACGATGCTTCTCTGTTCTATGCAGACGATGATTTCCCTTCTCTTCCAGATTTCTCATGCATGTCGTCTTCTTCATCTTCATCTTCACCACCAGCAGCCACAACAGTCGAAACCGTCGTCACGTGCGCCGCCACCTCGTCCTCCAATACGTCCTCTTCTGGTTGCGTGGCTTCATGGGTGAATCTCAAGTCAAATGCATCAGAGCCTCCTGATCTCCCACCAGCGCCCCAGACACAGCCGCCGCCGGCGTTATCCTCCACTGCTTCTATGGAAATCTCGAAGCCGCCAGATCATCAAGGCGGCGGAGATTGTCTGGACATGATGGACACATTTGGGACTATGGAACTCATGGAAAGCAACGAATTATTCGATCCTTCGTCAATCTTTGCAAACGAAGAGAATCTATTAGACGAATTGGCAGATTTAGACCCGAATGGTCCAGAAGAGGGACATGCAAATGGTGGAATGATACTACAGGAGGAACAGCAACAACAACCACCGCCGTTGGCGGAGAAGGCCACGGATGAAGAGATGAGTTCGGTGTTCTTGGAGTGGCTGAAGATGAACAAGGATAGCGTATCGGCCAGTGATTTGAGGAACGTGAGATTGAAGAAGGCGACAATAGAATGTGCAGCGAAGCGTCTTGGTGGAGGAAAAGAAGGCATGAAGCAATTACTGAAGCTGATTCTGGAATGGGTTCAGACCAGTCATCTTCAGAAGAAAAGGCGCATGGATCAAAATCATGATAATAATGACAATCTTTTCATGACTCAGTTTCAGGAGAATACCACAAACCCTAGCTCTAATCTCAACCACCAATCTTCATTCGGACAGGAATGGTTCTCTCAGCCGCCTTATGGGGTTGATCCGGCTGCTCTAACGGCTGCTCCGCCATTTCCGCAACGTGTCCTGGGAGACCCGTTTTCAAATGGGGCTACAACTGAATTTCATGCACTGGATTCTACTCCTTCATGGCCTCATTCTCAGTTCACGGTTTACCACAACCACCCATTCGGGGACAATAATCTACACCCAACCACGGCGATGGCGGCTTTCGGTGGTTATGGGAACAATCAGTACCAGTATCAGTATTTTCATGGCGTCGGCGCAGATAGATTGGGTCCGTTGGCAACCAAAGAAGCGAGGAAGAAGAGAATGGCGAGGCAGAGACGGCATTTAACTCATCACAGGCATCACAATGCGCAAGACCAACAAAACCAGCAGAATCAAAGTAGTGATTGTTGCACTGCTGCTACAGTATCCCCTCATGCAAATCCACCCAACTGGTTGTATTGGCCGCCGGCGGTGGCAGTGTCAAATGGTGGAGCCGCTTCTCTAACGCCAACGGCTCAGGCGGAGCCACCGTCAGGGAGAAATGCGGGGGATCGGACCACCATGCAGTCCGACCAGAATCATCAACGAAGCCGGCTCTCATCAGAGAAACGACAGCAGGGATGGAAGCCTGAGAAGAACTTGAAGTTCCTTCTGCAGAAGGTGTTAAAGCAAAGCGACGTGGGTAATCTGGGGAGAATAGTGTTACCAAAGAAAGAAGCAGAAACGCATTTGCCAGAACTGGAGGAAAGAGATGGGATTTCGATAGCAATGGAAGACATCGGAACTTGTCGTGTTTGGAACATGCGCTATAGATACTGGCCAAACAACAAAAGCAGGATGTATTTGCTCGAGAATACTGGAGATTTTGTGAGAGCCAACGGACTTGAAGAAGGAGACTTCATAGTGATATATTCAGATGTCAAATGTGGCAAATATATGATAAGGGGTGTGAAGGGTCGACCTTTTGCTCCTCTAACCCCTTTTCAATTTCTTTCACCCAATTCCTCTTTGAAGTTCAAGAATCAGTCTCTGAGATTCATTCGCCCCAAGATATCCAGAACCCACAAGCCTCGCACTTCCTTTACAGCATTGAAATTTAGTAGGGATGGAATTGAGGCTGGTACTGATCTGGTTCCTGATTCTATACCGAGACCCGTAGCGAGGATTTCTGTAACCTTTGTAGCATTGAGCGTTGGACTTTTTGTTCTGAAGTCTGTCCTCTCTACGGCATTCTTTATACTAGCCACTATGGGATTTGCATATTTCGCATTACTAGCTTTTAATAAAGATCAAGGGCGAAGTGGAGGCAGAGACACCACCTCCTCCTCCCCTATGGATGATCCAGTGGAAGAAGCCAGAAAAATAATGGAAAAGTACAAGTAG 2379 0.4775 MNGPVKPQVKLGDFFEEEEGTVIAAVKEREIWLQNNNGGHGHQDDEDDLLAGVMDDASLFYADDDFPSLPDFSCMSSSSSSSSPPAATTVETVVTCAATSSSNTSSSGCVASWVNLKSNASEPPDLPPAPQTQPPPALSSTASMEISKPPDHQGGGDCLDMMDTFGTMELMESNELFDPSSIFANEENLLDELADLDPNGPEEGHANGGMILQEEQQQQPPPLAEKATDEEMSSVFLEWLKMNKDSVSASDLRNVRLKKATIECAAKRLGGGKEGMKQLLKLILEWVQTSHLQKKRRMDQNHDNNDNLFMTQFQENTTNPSSNLNHQSSFGQEWFSQPPYGVDPAALTAAPPFPQRVLGDPFSNGATTEFHALDSTPSWPHSQFTVYHNHPFGDNNLHPTTAMAAFGGYGNNQYQYQYFHGVGADRLGPLATKEARKKRMARQRRHLTHHRHHNAQDQQNQQNQSSDCCTAATVSPHANPPNWLYWPPAVAVSNGGAASLTPTAQAEPPSGRNAGDRTTMQSDQNHQRSRLSSEKRQQGWKPEKNLKFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEERDGISIAMEDIGTCRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLEEGDFIVIYSDVKCGKYMIRGVKGRPFAPLTPFQFLSPNSSLKFKNQSLRFIRPKISRTHKPRTSFTALKFSRDGIEAGTDLVPDSIPRPVARISVTFVALSVGLFVLKSVLSTAFFILATMGFAYFALLAFNKDQGRSGGRDTTSSSPMDDPVEEARKIMEKYK 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0982 792 FunFam B3 domain-containing transcription factor FUS3 546 656 - -
Lele40g0982 792 Pfam B3 DNA binding domain 551 647 IPR003340 GO:0003677
Lele40g0982 792 MobiDBLite consensus disorder prediction 120 158 - -
Lele40g0982 792 MobiDBLite consensus disorder prediction 457 473 - -
Lele40g0982 792 MobiDBLite consensus disorder prediction 764 792 - -
Lele40g0982 792 MobiDBLite consensus disorder prediction 437 452 - -
Lele40g0982 792 CDD BfiI_C_EcoRII_N_B3 548 649 - -
Lele40g0982 792 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 232 652 IPR044800 GO:0003700
Lele40g0982 792 MobiDBLite consensus disorder prediction 499 539 - -
Lele40g0982 792 SUPERFAMILY DNA-binding pseudobarrel domain 549 645 IPR015300 -
Lele40g0982 792 Coils Coil 781 792 - -
Lele40g0982 792 SMART B3_2 550 652 IPR003340 GO:0003677
Lele40g0982 792 MobiDBLite consensus disorder prediction 434 473 - -
Lele40g0982 792 Gene3D - 541 652 IPR015300 -
Lele40g0982 792 MobiDBLite consensus disorder prediction 499 527 - -
Lele40g0982 792 ProSiteProfiles B3 DNA-binding domain profile. 550 652 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0982 Lele-ChrLele40 20275780 20281161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0982 29 652 B3 DNA Binding Superfamily AT3G24650 47.654 1.37e-148 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele40g0982 B3 2.7e-17 CL0405