Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0977 ATGGTCTTGATCCAACAGGAAGAGACTGAGACTGAAGAGAAAGTCGTGAGTCCCTCTGAATCTGCGAAAACTGCGAAGTCGTCAGCCTCCTCCAATGTCGATGACCATAAAGAAGCTTCCGATGGCTTCGAAACCGCCAGCGACACCGAGCTTGGCAGCGACGTAGATGATACGCATAAAGAACGGGAACGACAACATCAACATCAGGAGCTGGGGATTCCTCCGGGGACTGATTCTTCCGAAGAGGCATCACATGACGAGGAATTGAAACAGAAGGCATTGGCTCAAGCGAATGATGCAAAATTAGAAGGGAATAAGCTATTTGGGGATTGGCAATTTGAGGAGGCATTATCAAAGTATGAACTTGCCTTACAAATTGCTCCAGATATGCCTTCATCTGTTGAAGTACGTTCAATATGCCATTCAAATCGTGCTGTATGCTTTATGAAATTGGGTAAATATGAGGACACAATCAAAGAGTGCTCTAAGGCATTGGAACTCAATCCTGCATATCTGAAAGCTCTGGTGAGAAGAGGCGAGGCACATGAAAAGCTTGAGCATTTTGAAGAAGCCATTGCTGATATGAAAAAGATCATAGAAATTGACCCCTCAAATGATCAAGCTAGGAGAACCATAAAGAAATTGGAACCCCTGGCAGCAGAAAAGCGGGAGAAGATGAAGGAAGAAATGATTGGTAAACTGAAAGAAATGGGCAATTCTTTGTTGGGCCGCTTTGGGATGAGCGTTGACAACTTCAAAGCTGTTCAAGACCCCAACACTGGTTCCTATTCCATCTCATTCCAACGCTAA 810 0.4457 MVLIQQEETETEEKVVSPSESAKTAKSSASSNVDDHKEASDGFETASDTELGSDVDDTHKERERQHQHQELGIPPGTDSSEEASHDEELKQKALAQANDAKLEGNKLFGDWQFEEALSKYELALQIAPDMPSSVEVRSICHSNRAVCFMKLGKYEDTIKECSKALELNPAYLKALVRRGEAHEKLEHFEEAIADMKKIIEIDPSNDQARRTIKKLEPLAAEKREKMKEEMIGKLKEMGNSLLGRFGMSVDNFKAVQDPNTGSYSISFQR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0977 269 Pfam Tetratricopeptide repeat 140 170 IPR001440 GO:0005515
Lele40g0977 269 MobiDBLite consensus disorder prediction 1 88 - -
Lele40g0977 269 Gene3D Tetratricopeptide repeat domain 59 236 IPR011990 GO:0005515
Lele40g0977 269 ProSiteProfiles TPR repeat profile. 172 205 IPR019734 GO:0005515
Lele40g0977 269 SMART tpr_5 172 205 IPR019734 GO:0005515
Lele40g0977 269 SMART tpr_5 138 171 IPR019734 GO:0005515
Lele40g0977 269 SMART tpr_5 97 130 IPR019734 GO:0005515
Lele40g0977 269 MobiDBLite consensus disorder prediction 30 44 - -
Lele40g0977 269 ProSiteProfiles TPR repeat profile. 138 171 IPR019734 GO:0005515
Lele40g0977 269 SUPERFAMILY TPR-like 96 215 IPR011990 GO:0005515
Lele40g0977 269 MobiDBLite consensus disorder prediction 52 69 - -
Lele40g0977 269 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 12 269 - -
Lele40g0977 269 Pfam Tetratricopeptide repeat 173 205 IPR013105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0977 Lele-ChrLele40 20227097 20230008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0977 68 228 Calmodulin-binding Proteins AT3G25230 32.402 6.86e-13 66.2