Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0954 ATGGTGTCAGGATCAGGGATCTGCGCGAAGAGGGTGGTGGTCGATGCTCGTCACCATATGTTGGGTCGTCTGGCCTCGATCGTGGCCAAGGAGCTCCTCAATGGCCAGAAGGTGGTCGTGGTGAGGTGCGAGGAGATTTGCATCTCCGGTGGCCTAGTGAGACAGAAGATGAAGTACATGAGGTTCCTTCGTAAGCGCATGAACACCAAGCCTTCACATGGTCCCATTCACTTCCGAGCTCCTAGCAAGATCTTCTGGCGCACTGTTCGTGGAATGATACCCCACAAGACAAAGCGTGGAGCAGAAGCCCTTGGTAGATTGAAGGTTTATGAGGGCATTCCTCCTCCATATGACAAGATGAAGAGGATGGTTGTCCCTGATGCTCTGAAAGTGTTGAGGCTTCAGAAAGGACACAAATACTGCTTGGTAGGAAAATTGTCATCTGAAGTTGGCTGGAATTATTACGACACCATCAGGGAGTTGGAGAAGAAGAGAAAGGAGAGGGCTCAAGAGGTTTATGAGAGGAAGAAGCAGCTCAACAAACTGAGGGTGAAGGCTGAGAAGATCGCAGAGGAAAAGCTTGGCCCTCAACTTGACATCCTTGCTCCCGTTAAGAGACATATATTGGCTTGGAGACATACTGAGGCATGTTCTTCAATTGATATGAGTTTTGAATCAGAACCAAAAGGTTCCAAAAGAAAAGGTCGTAGGGAATTACTAGGATTTAGGGATAGTGGGAGAATCGAAGTCATCTCGCAATTCCCAAAGTCTTACTTTACTTTGCCATTTCTGCTCTATTCTTCTGCCCTAAAATCACGACCTCTCTGA 828 0.4771 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAEALGRLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKYCLVGKLSSEVGWNYYDTIRELEKKRKERAQEVYERKKQLNKLRVKAEKIAEEKLGPQLDILAPVKRHILAWRHTEACSSIDMSFESEPKGSKRKGRRELLGFRDSGRIEVISQFPKSYFTLPFLLYSSALKSRPL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0954 275 FunFam 60S ribosomal protein L13a 155 206 - -
Lele40g0954 275 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lele40g0954 275 Coils Coil 159 179 - -
Lele40g0954 275 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lele40g0954 275 FunFam 60S ribosomal protein L13a-4 8 154 - -
Lele40g0954 275 TIGRFAM L13_A_E: ribosomal protein uL13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Lele40g0954 275 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Lele40g0954 275 Gene3D - 156 205 - -
Lele40g0954 275 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele40g0954 275 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele40g0954 275 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele40g0954 275 PANTHER RIBOSOMAL PROTEIN L13 1 186 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0954 Lele-ChrLele40 20004947 20008706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0954 1 205 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 90.244 1.75e-138 387