Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0949 ATGAAACGCCCGATCGATGTGCCCTTGGCTTCGTCGGCTTCTTCCTCTGGCGCCGCCGCACCTTCGAAGCCGGTGTTCTTAGCTAAAGCTCAGCGTGAAGAATTGGCTCTTAAGCGGCGCCAAGAAGAAATCGCCGAACAAAGGCGCCGTCAGGAACAGCTGCTTTCTCGGAACCGCCCGTCCGACCCAAACTCCGATTCTAAACCTTCCAATTCCGACCGACGTGACCGCGACCGTGACCGGGACCGGGACCGGGACCGCGATCGGGACAGGGATAGGGATAGAGAGCGGGAGCGAGAGAGGGACCGTGAGCGCGAGCGAGATAGGGCTCGTGATCGGGACCGTGAAACAGAACGCAGGAACCGCGAGAGGGAGCGCGAAGAGGAGGCTAAGGCTCGTGAGCGTGCTCGGAATGAGAAATTGCAAGAGCGGGAGCGTGAGAAAGAGCTTGATTCGATCAAGGAGCAGTATCTTGGTTCGAAGAAGCCTAAGAAGCGAGTTATCAAACCCAGTGAGAAGTTTCGGTTTTCCTTCGATTGGGAGAACACGGAGGATACTTCTCGTGACATGAACATTCTCTACCAGAACCCTCACGAAGCGCAGCTTCTCTTCGGTCGTGGCTTTCGTGCTGGCATGGACCGGCGTGAGCAGAAGAAGCTTGCTGCTAAGAATGAGAAGGAGATGCGCGAACAGATCCGGAAGAAGGAGGGCGTGGAGGAGAAGCCAGAAGAGGCCGTTGCACAACGGCGGAAGGAGGCTGCTGCTGACCTCTATGACACCTTTGACATGAGAGTTGACCGCCACTGGAGCGAGAAGAAGCTTGATGAGATGACTGAGAGGGATTGGCGTATATTTAGGGAGGATTTCAACATTTCCTACAAGGGTTCTAAAATTCCTCGTCCAATGCGTAGCTGGGTTGAGAGTAAGTTGAGTCCTGAGCTATTGAAGGCGGTTGAGAAAGCTGGGTACAAGACCCCTTCTCCCATTCAGATGGCTTCCATTCCTCTTGGCCTTCAGCAGCGTGATGTCATTGGCATTGCCGAGACAGGTTCAGGTAAGACTGCTGCTTTTGTGCTTCCCATGCTGAGTTACATCACAAGACTTCCTCCCATAAGTGAAGAGAATGAGGCTGAGGGTCCCTATGCTGTCGTTATGGCACCTACACGTGAACTTGCACAGCAGATTGAGGATGAGACCGTGAAGTTTGCTCAGTATCTTGGGATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAAGAGCAAGGTTTTAAGATAAGGCAAGGTTGTGAAATTGTAATTGCCACTCCTGGTCGATTGATTGATTGCTTGGAGAGGCGTTATGCTGTCCTAAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGCATGATTGATATGGGATTTGAGCCTCAAGTTATGGGTGTCCTGGATGCAATGCCTTCCAGCAATATGAAACCAGAAAATGAAGATGAAGAGCTTGATGAGAAGAGGATTTACAGAACCACTTATATGTTCAGTGCCACCATGCCTCCTGCAGTTGAGCGGCTTGCTAGGAAATACTTGAGGAACCCTGTTGTGGTAACCATAGGCACTGCAGGAAAGGCTACTGATTTGATCAGCCAGCATGTGATTATGATGAAGGAATCTGAAAAGTTTTTCAAACTGCAACGGCTGCTTGATGAACTTAATGACAAGACAGCTATTGTATTTGTTAACACTAAGAAAAATGCTGACATGGTTGCAAAGAATTTGGATAGGGAAGGCTACCGTGTAACCACTTTGCATGGTGGCAAGTCACAGGAGCAGAGAGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTCTTGGTTGCTACTGATGTTGCAGGGCGTGGGATTGACATACCTGATGTGGCTCATGTCATAAACTATGACATGCCTGGGAATATTGAGATGTACACACATCGTATTGGACGTACTGGTCGTGCTGGGAAGACCGGTGTTGCTACAACATTCCTGACTCTTCAAGACTCTGATGTCTTTTATGACCTCAAACAGATGCTTATACAGAGTAATAGTCCTGTCCCTCCTGAATTGGCTAGACATGAGGCTTCAAAATTCAAGCCAGGATCCATTCCTGATAGACCACCTAGACGAAATGACACCGTATTTGCACACTGA 2172 0.4926 MKRPIDVPLASSASSSGAAAPSKPVFLAKAQREELALKRRQEEIAEQRRRQEQLLSRNRPSDPNSDSKPSNSDRRDRDRDRDRDRDRDRDRDRDRERERERDRERERDRARDRDRETERRNREREREEEAKARERARNEKLQEREREKELDSIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNILYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKEGVEEKPEEAVAQRRKEAAADLYDTFDMRVDRHWSEKKLDEMTERDWRIFREDFNISYKGSKIPRPMRSWVESKLSPELLKAVEKAGYKTPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNMKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFFKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDREGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0949 723 MobiDBLite consensus disorder prediction 698 723 - -
Lele40g0949 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 682 IPR027417 -
Lele40g0949 723 SMART helicmild6 580 661 IPR001650 -
Lele40g0949 723 Coils Coil 93 156 - -
Lele40g0949 723 MobiDBLite consensus disorder prediction 1 25 - -
Lele40g0949 723 FunFam probable ATP-dependent RNA helicase DDX23 534 722 - -
Lele40g0949 723 Coils Coil 215 241 - -
Lele40g0949 723 MobiDBLite consensus disorder prediction 691 723 - -
Lele40g0949 723 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 232 700 - -
Lele40g0949 723 MobiDBLite consensus disorder prediction 38 56 - -
Lele40g0949 723 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 334 529 IPR014001 -
Lele40g0949 723 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 458 466 IPR000629 -
Lele40g0949 723 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 303 331 IPR014014 GO:0003724
Lele40g0949 723 FunFam probable ATP-dependent RNA helicase DDX23 264 533 - -
Lele40g0949 723 CDD DEADc_DDX23 314 530 - -
Lele40g0949 723 MobiDBLite consensus disorder prediction 220 246 - -
Lele40g0949 723 MobiDBLite consensus disorder prediction 38 168 - -
Lele40g0949 723 Coils Coil 27 57 - -
Lele40g0949 723 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 556 700 IPR001650 -
Lele40g0949 723 Gene3D - 264 533 IPR027417 -
Lele40g0949 723 Pfam DEAD/DEAH box helicase 328 518 IPR011545 GO:0003676|GO:0005524
Lele40g0949 723 Pfam Helicase conserved C-terminal domain 556 661 IPR001650 -
Lele40g0949 723 MobiDBLite consensus disorder prediction 68 162 - -
Lele40g0949 723 SMART ultradead3 322 544 IPR014001 -
Lele40g0949 723 CDD SF2_C_DEAD 541 670 - -
Lele40g0949 723 Gene3D - 534 721 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0949 Lele-ChrLele40 19979687 19981858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0949 304 697 Eukaryotic Initiation Factors Gene Family AT1G72730 32.911 4.77e-61 209