Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0931 ATGAGCACTCAAGCAGTCAGGGGGCCTGCTGTTAGAAGTGGTCGAAGGAGGAAGACAGTTTTGAACTTGGACCTGAACTGTTTCCCACCAAATGAGAATAGGGAACAGGGGGGACCTTCAACTCAATTGGTGCCTCAAGAAGTTCAAGCTGGACAGCAACTGCCAGTTGCACAGCCTGTGATGATTGATGTGGAGGCCATTGAAGATGATGATGTTGTTGAATCCAGTCCCAGGGCTTTTGCTGAGGCTAAAAACAGTGGGAGAAGTCGTAGGAGAACTGTAGTTGATGTGGATTTAGAAGAGTGGACGGGAGGAATCAATAATGGTCGCCACAAACGCAGAAGAAGTTCCTCAAACCAAACAATTATTAACTGCGATCTTTATGTAAACCTGGAAGCCAGTAACAGTTCTACGACGGGAAACATACGAATGCCACCGGAACCTCCAAAGGATCCTGTCTTTAACTGCCCAATATGTATGGGCCCATTAGTAGAAGAAATGTCAACAAGATGTGGTCATATTTTTTGCAACAATTGCGTTAGAGCTGCAATAAAAGTGCAAAGTAAATGCCCCACCTGCAGGAAAAAGGTTACTGTGAAAGACCTTAGAAGGGTGTTTCTGCCAGCAACTAGTTGA 636 0.4528 MSTQAVRGPAVRSGRRRKTVLNLDLNCFPPNENREQGGPSTQLVPQEVQAGQQLPVAQPVMIDVEAIEDDDVVESSPRAFAEAKNSGRSRRRTVVDVDLEEWTGGINNGRHKRRRSSSNQTIINCDLYVNLEASNSSTTGNIRMPPEPPKDPVFNCPICMGPLVEEMSTRCGHIFCNNCVRAAIKVQSKCPTCRKKVTVKDLRRVFLPATS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0931 211 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Lele40g0931 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 210 IPR013083 -
Lele40g0931 211 SUPERFAMILY RING/U-box 155 200 - -
Lele40g0931 211 SMART ring_2 156 193 IPR001841 -
Lele40g0931 211 ProSiteProfiles Zinc finger RING-type profile. 156 194 IPR001841 -
Lele40g0931 211 PANTHER ELFLESS, ISOFORM B 2 211 - -
Lele40g0931 211 Pfam Zinc finger, C3HC4 type (RING finger) 155 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0931 Lele-ChrLele40 19861170 19865835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0931 1 210 C3H Transcription Factor Family AT5G48655 48.372 1.92e-47 153